5ZWH-C-A

PDB Title COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING AN ENE-YNONE GROUP VIA CONJUGATE ADDITION REACTION
Resolution (Å) 2.380
Classification HORMONE

Protein

Description Vitamin D3 receptor
Organism Rattus norvegicus
Chain A
Length 239
Binding Area (Å2) 525.92
Molecular Weight -
Aromaticity 0.07
Instability -
Isoelectric Point 6.06
Sequence KLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNXX

Peptide

Description 13-meric peptide from DRIP205 NR2 BOX peptide
Organism Homo sapiens
Chain C
Length 11
Binding Area (Å2) 560.57
Hydrophobic (% a.a.)
54%
Molecular Weight 1338.68
Aromaticity 0.00
Instability -8.10
Isoelectric Point 10.00
Sequence KNHPMLMNLLK

Clustering Classification

Sequence cluster S 184
Contact cluster C7
Interface cluster I6