5XPN-C-A

PDB Title CRYSTAL STRUCTURE OF VDR-LBD COMPLEXED WITH 25RS-(HYDROXYPHENYL)-25- METHOXY-2-METHYLIDENE-19,26,27-TRINOR-1-HYDROXYVITAMIN D3
Resolution (Å) 1.960
Classification TRANSCRIPTION

Protein

Description Vitamin D3 receptor
Organism Rattus norvegicus
Chain A
Length 241
Binding Area (Å2) 543.57
Molecular Weight -
Aromaticity 0.07
Instability -
Isoelectric Point 6.06
Sequence KLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGXX

Peptide

Description Mediator of RNA polymerase II transcription subunit 1
Organism Homo sapiens
Chain C
Length 11
Binding Area (Å2) 600.90
Hydrophobic (% a.a.)
54%
Molecular Weight 1338.68
Aromaticity 0.00
Instability -8.10
Isoelectric Point 10.00
Sequence KNHPMLMNLLK

Clustering Classification

Sequence cluster S 184
Contact cluster C7
Interface cluster I6

Similar complexes

Is the complex classified in the same cluster?

Complex Sequence cluster
(S184) 		Contact cluster
(C7) 		Interface cluster
(I6)
1rk3-C-A
3aun-B-A
1rkg-C-A
3vtc-B-A
5gic-C-A
1rkh-C-A
3w0g-C-A
3vjs-C-A
3w0h-C-A
2o4j-C-A
3vjt-C-A
3w0i-C-A
6k5o-C-A
2o4r-C-A
3w0j-C-A
2zfx-C-A
3vru-C-A
3w5p-C-A
2zl9-C-A
3vrv-C-A
2zla-C-A
3w5r-C-A
2zlc-C-A
3vt3-C-A
3w5t-C-A
5xpm-C-A
2zmh-C-A
3vt4-C-A
3wt5-C-A
2zmi-C-A
3vt5-C-A
3wt6-C-A
4ynk-C-A
5xzf-C-A
2zmj-C-A
3vt6-C-A
5awj-C-A
5xzh-C-A
3vt7-C-A
3wtq-C-A
5b41-C-A
5zwf-C-A
3a2h-B-A
3vt8-C-A
5b5b-C-A
5zwh-C-A
1rjk-C-A
3afr-C-A
3vt9-C-A
5b5b-F-D
5zwi-C-A
4g1z-B-A
5e7v-B-A
3o1d-B-A
4g2h-B-A
6fo8-B-1
3o1e-B-A
4ia1-B-A
6fod-B-A
2hc4-B-A
5lga-B-A
5nky-B-A
5ow7-B-A
5ow9-B-A
5owd-B-A
5xpl-C-A
4q0a-D-C
4ruj-B-A
4fhh-B-A
4fhi-B-A
3vtb-B-A
5gid-C-A
3vrt-C-A
3w5q-C-A
3vrw-C-A
5xpo-C-A
3wt7-C-A
2zxn-C-A
6jez-C-A
6d94-B-A
4j24-K-C
4j24-I-A
4j24-J-B
6onj-C-A
4j24-L-D
4j26-I-A
4j26-J-B