2Z23-B-A

PDB Title CRYSTAL STRUCTURE OF Y.PESTIS OLIGO PEPTIDE BINDING PROTEIN OPPA WITH TRI-LYSINE LIGAND
Resolution (Å) 2.000
Classification PEPTIDE BINDING PROTEIN

Protein

Description Periplasmic oligopeptide-binding protein
Organism Yersinia pestis
Chain A
Length 517
Binding Area (Å2) 327.12
Molecular Weight 58789.69
Aromaticity 0.10
Instability 33.26
Isoelectric Point 5.64
Sequence ANVPTGVQLAEKQVLVRNNGSEPQSLDPHKIEGVPESNISRDLLEGLVINDPNGNIVPGAAESWDNKDFKVWTFNIRKDAKWSNGDPVTAQDFVYSWQRLADPKTVSPYASYLQYAHLTNIDDIITGKAAPDTLGVKALDDHTLEVTLSEPVPYLDKLLAHPLMSPVNKTVVEKFGEKWTQPQNFVGNGAYKLKDWIVNERIVLERSPTYWDNAKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDQVHVDPYLCTYYYEINNQKAPFTDARVREALKLGMDRDIIVNKVKNQGDLPAYGFTPPYTSGAELTPPEWFSWTQEKRNEVAKKLLAEAGYTKDNPLKFSLLYNTSDLHKKLAIAAASIWKKNLGVDVKLENQEWKTFLDTRHQGTYDVARAAWCADYNEPSSFLNMMLSNSSNNTTHYKSSVFDKLIEDTLKVKSEKERADLYQQAEIQLDKDSAIVPVFYYVSARLVKPYVGGYTGKDPLDNMHVKDLYIIKQ

Peptide

Description peptide (LYS)(LYS)(LYS)
Organism -
Chain B
Length 3
Binding Area (Å2) 692.49
Hydrophobic (% a.a.)
0%
Molecular Weight 402.53
Aromaticity 0.00
Instability 6.67
Isoelectric Point 10.30
Sequence KKK

Clustering Classification

Sequence cluster S 629
Contact cluster C12
Interface cluster I10

Similar complexes

Is the complex classified in the same cluster?

Complex Sequence cluster
(S629) 		Contact cluster
(C12) 		Interface cluster
(I10)
1olc-B-A
6dtf-B-A
2olb-B-A
1b3f-B-A
1ola-B-A
6dqu-B-A
1b3g-B-A
1b3l-B-A
1qka-B-A
6dtg-B-A
1b3l-D-C
1qkb-B-A
6dth-B-A
1b40-B-A
1b46-B-A
3tcg-I-A
1b4z-B-A
3tcg-J-B
1b51-B-A
3tcg-K-C
1b52-B-A
3tcg-L-D
1b58-B-A
3tcg-M-E
1b5i-B-A
3tcg-N-F
1b5j-B-A
3tcg-O-G
1b9j-B-A
3tcg-P-H
1jet-B-A
6dqq-B-A
1b05-B-A
1jeu-B-A
6dqr-B-A
1b32-B-A
1jev-B-A
6dqt-B-A