Download RNApedia datasets
Download the complete RNApedia dataset, curated subsets, sequence files, and summary tables. Large datasets are hosted on Zenodo, while smaller files are served directly from the RNApedia server.
Tip:
For large downloads, such as the complete RNApedia dataset, we recommend using
a stable internet connection or command-line tools such as
wget or curl.
| Dataset | Type | Size | Source | |
|---|---|---|---|---|
|
Complete RNApedia dataset
RNApedia.zip
|
ZIP | 35.5 GB | Zenodo | Download |
|
Protein–RNA pairs with experimental binding affinity data
affinity.zip
|
ZIP | 250.9 MB | Zenodo | Download |
|
Protein–RNA pairs containing annotated RNA modifications
modifications.zip
|
ZIP | 33.0 GB | Local | Download |
|
Protein–RNA pairs containing ribosomal RNA (rRNA)
ribosomal_rna.zip
|
ZIP | 30.6 GB | Local | Download |
|
Protein–RNA pairs excluding ribosomal RNA (non-rRNA)
non_ribosomal_rna.zip
|
ZIP | 2.4 GB | Local | Download |
|
Protein sequences
protein.fasta
|
FASTA | 11.8 MB | Local | Download |
|
RNA sequences
rna.fasta
|
FASTA | 75.7 MB | Local | Download |
|
RNApedia – List of protein–RNA complex structures (TSV)
rnapedia_database.tsv
|
TSV | 6.1 MB | Local | Download |
Complete and affinity datasets are hosted on Zenodo record
20073649. Curated subsets and sequence files are
available locally from the RNApedia server.
