VTR

17 main matches found (18 matches in total )

Execution time: 88.0 seconds

Match RMSD = 1.05

VTR = 0.13

Average AVD = 1.01 Å

Parameters

Chains(7LAA.pdb ): A versus H

Chains(7LAA_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LAA 2985 4 16 13 0 2 0 35
B7LAA_uk_mut 2984 3 14 12 0 4 0 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H E484 R96 E484 R94 Attractive Attractive Hydrogen Bonds 1.23 View
A-H A-H E484 R96 E484 R94 Attractive Attractive 1.2 View
A-H A-H E484 R96 E484 R94 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.52 View
A-H A-H E484 D101 E484 D101 Repulsive Repulsive 0.81 View
A-H A-H E484 R96 E484 R96 Attractive Attractive 0.77 View
A-H A-H E484 R96 E484 R94 Attractive Attractive 1.28 View
A-H A-H S494 S56 S494 S56 Hydrogen Bonds Hydrogen Bonds 0.78 View
A-H A-H E484 R96 E484 R96 Attractive Attractive 0.69 View
A-H A-H E484 D101 E484 D101 Repulsive Repulsive 1.08 View
A-H A-H S494 D54 S494 D54 Hydrogen Bonds Hydrogen Bonds 0.98 View
A-H A-H L492 R52 L492 R52 Hydrogen Bonds Hydrogen Bonds 1.27 View
A-H A-H E484 R96 E484 R94 Attractive Attractive Hydrogen Bonds 0.44 View
A-H A-H E484 R96 E484 R96 Hydrophobic Hydrophobic 1.4 View
A-H A-H E484 R94 E484 D101 Attractive Hydrogen Bonds Repulsive 1.52 View
A-H A-H F486 S31 F486 S31 Hydrogen Bonds Hydrogen Bonds 0.93 View
A-H A-H Y449 R97 Y449 R97 Hydrogen Bonds Hydrogen Bonds 0.99 View
A-H A-H E484 R96 E484 R94 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.31 View
A-H A-H Q493 D54 Q493 D54 Hydrogen Bonds Hydrogen Bonds 0.96 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LAA | 7LAA_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LAA A-H Y449 R97 Hydrogen Bonds 3.34 View
7LAA A-H L452 D99 Hydrophobic 4.46 View
7LAA A-H L452 D99 Hydrophobic 4.04 View
7LAA A-H L452 D99 Hydrophobic 3.73 View
7LAA A-H E484 R94 Attractive 4.91 View
7LAA A-H E484 R94 Attractive 3.66 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 2.81 View
7LAA A-H E484 R94 Attractive 4.55 View
7LAA A-H E484 R94 Attractive 3.37 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 3.28 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 2.71 View
7LAA_uk_mut A-H E484 R94 Attractive 5.23 View
7LAA_uk_mut A-H E484 R94 Attractive, Hydrogen Bonds 4.41 View
7LAA_uk_mut A-H E484 R96 Attractive 5.51 View
7LAA_uk_mut A-H E484 R96 Attractive 5.35 View
7LAA_uk_mut A-H E484 R96 Attractive 4.96 View
7LAA_uk_mut A-H E484 R96 Attractive, Hydrogen Bonds 4.25 View
7LAA_uk_mut A-H E484 D101 Repulsive 5.16 View
7LAA_uk_mut A-H F490 D99 Hydrophobic 4.37 View
7LAA_uk_mut A-H F490 D99 Hydrophobic 4.34 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph