VTR

7 main matches found (31 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.32

VTR = 0.0

Average AVD = 0.29 Å

Parameters

Chains(7K45.pdb ): B versus H

Chains(7K45_uk_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K45 418 24 0 6 0 0 1 31
B7K45_uk_mut 418 24 0 9 0 0 1 34

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-B H-B W50 Y489 W50 Y489 Hydrophobic Hydrophobic 0.36 View
H-B H-B G104 Y473 G104 Y473 Hydrogen Bonds Hydrogen Bonds 0.77 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.13 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.26 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.4 View
H-B H-B V52 Y489 V52 Y489 Hydrophobic Hydrophobic 0.25 View
H-B H-B P99 F486 P99 F486 Hydrophobic Hydrophobic 0.25 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.21 View
H-B H-B P99 F486 P99 F486 Hydrophobic Hydrophobic 0.36 View
H-B H-B C106 A475 C106 A475 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-B H-B C106 A475 C106 A475 Hydrophobic Hydrophobic 0.14 View
H-B H-B W50 Y489 W50 Y489 Hydrophobic Hydrophobic 0.41 View
H-B H-B V52 Y489 V52 Y489 Hydrophobic Hydrophobic 0.34 View
H-B H-B D108 S477 D108 S477 Hydrogen Bonds Hydrogen Bonds 0.36 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.21 View
H-B H-B D108 S477 D108 S477 Hydrogen Bonds Hydrogen Bonds 0.5 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.3 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.2 View
H-B H-B V52 Y489 V52 Y489 Hydrophobic Hydrophobic 0.26 View
H-B H-B V52 Y489 V52 Y489 Hydrophobic Hydrophobic 0.27 View
H-B H-B F110 F486 F110 F486 Aromatic Stacking Aromatic Stacking 0.21 View
H-B H-B W50 F486 W50 F486 Hydrophobic Hydrophobic 0.3 View
H-B H-B D108 N487 D108 N487 Hydrogen Bonds Hydrogen Bonds 0.35 View
H-B H-B V52 Y489 V52 Y489 Hydrophobic Hydrophobic 0.35 View
H-B H-B V52 Y489 V52 Y489 Hydrophobic Hydrophobic 0.24 View
H-B H-B P99 F486 P99 F486 Hydrophobic Hydrophobic 0.26 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.17 View
H-B H-B V52 F456 V52 F456 Hydrophobic Hydrophobic 0.28 View
H-B H-B S107 N487 S107 N487 Hydrogen Bonds Hydrogen Bonds 0.22 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.3 View
H-B H-B F110 F486 F110 F486 Hydrophobic Hydrophobic 0.16 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K45 | 7K45_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K45_uk_mut H-B G54 Q493 Hydrogen Bonds 3.43 View
7K45_uk_mut H-B S55 Q493 Hydrogen Bonds 3.14 View
7K45_uk_mut H-B D108 N487 Hydrogen Bonds 3.77 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph