VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH THE S2E12 NEUTRALIZING ANTIBODY FAB FRAGMENT (LOCAL REFINEMENT OF THE RBD AND FAB VARIABLE DOMAINS): 0 - H ALA 33 CB VS B PHE 486 CD1 Distance: 5.130379 - Hydrophobic, 1 - H ALA 33 CB VS B PHE 486 CE1 Distance: 4.855686 - Hydrophobic, 2 - H ALA 33 CB VS B TYR 489 CE2 Distance: 5.140139 - Hydrophobic, 3 - H TRP 50 CE3 VS B PHE 486 CD1 Distance: 4.829143 - Hydrophobic, 4 - H TRP 50 CE3 VS B PHE 486 CE1 Distance: 5.394594 - Hydrophobic, 5 - H TRP 50 CZ2 VS B PHE 486 CB Distance: 5.271968 - Hydrophobic, 6 - H TRP 50 CZ2 VS B PHE 486 CD1 Distance: 5.489069 - Hydrophobic, 7 - H TRP 50 CZ3 VS B PHE 486 CB Distance: 5.089925 - Hydrophobic, 8 - H TRP 50 CZ3 VS B PHE 486 CG Distance: 5.154840 - Hydrophobic, 9 - H TRP 50 CZ3 VS B PHE 486 CD1 Distance: 4.241656 - Hydrophobic, 10 - H TRP 50 CZ3 VS B PHE 486 CE1 Distance: 4.947624 - Hydrophobic, 11 - H TRP 50 CH2 VS B PHE 486 CB Distance: 4.775836 - Hydrophobic, 12 - H TRP 50 CH2 VS B PHE 486 CG Distance: 5.213324 - Hydrophobic, 13 - H TRP 50 CH2 VS B PHE 486 CD1 Distance: 4.621304 - Hydrophobic, 14 - H TRP 50 CZ2 VS B TYR 489 CE2 Distance: 5.379299 - Hydrophobic, 15 - H TRP 50 CZ3 VS B TYR 489 CE2 Distance: 4.451423 - Hydrophobic, 16 - H TRP 50 CH2 VS B TYR 489 CD2 Distance: 5.142966 - Hydrophobic, 17 - H TRP 50 CH2 VS B TYR 489 CE2 Distance: 4.240923 - Hydrophobic, 18 - H VAL 52 CG1 VS B PHE 456 CE1 Distance: 4.973807 - Hydrophobic, 19 - H VAL 52 CG1 VS B PHE 456 CE2 Distance: 5.047331 - Hydrophobic, 20 - H VAL 52 CG1 VS B PHE 456 CZ Distance: 4.231403 - Hydrophobic, 21 - H VAL 52 CB VS B TYR 489 CG Distance: 5.491532 - Hydrophobic, 22 - H VAL 52 CB VS B TYR 489 CD2 Distance: 4.471741 - Hydrophobic, 23 - H VAL 52 CB VS B TYR 489 CE2 Distance: 4.152044 - Hydrophobic, 24 - H VAL 52 CG1 VS B TYR 489 CB Distance: 5.348857 - Hydrophobic, 25 - H VAL 52 CG1 VS B TYR 489 CG Distance: 4.500413 - Hydrophobic, 26 - H VAL 52 CG1 VS B TYR 489 CD1 Distance: 4.981015 - Hydrophobic, 27 - H VAL 52 CG1 VS B TYR 489 CD2 Distance: 3.758653 - Hydrophobic, 28 - H VAL 52 CG1 VS B TYR 489 CE1 Distance: 4.804113 - Hydrophobic, 29 - H VAL 52 CG1 VS B TYR 489 CE2 Distance: 3.526375 - Hydrophobic, 30 - H VAL 52 CG2 VS B TYR 489 CG Distance: 5.235891 - Hydrophobic, 31 - H VAL 52 CG2 VS B TYR 489 CD2 Distance: 3.988778 - Hydrophobic, 32 - H VAL 52 CG2 VS B TYR 489 CE2 Distance: 3.549897 - Hydrophobic, 33 - H ARG 72 NH2 VS B ARG 403 NH2 Distance: 6.971460 - Repulsive, 34 - H ARG 72 NH2 VS B LYS 417 NZ Distance: 6.612071 - Repulsive, 35 - H PRO 99 CB VS B PHE 486 CE1 Distance: 4.616216 - Hydrophobic, 36 - H PRO 99 CB VS B PHE 486 CE2 Distance: 5.029454 - Hydrophobic, 37 - H PRO 99 CB VS B PHE 486 CZ Distance: 4.036494 - Hydrophobic, 38 - H PRO 99 CG VS B PHE 486 CD1 Distance: 5.382896 - Hydrophobic, 39 - H PRO 99 CG VS B PHE 486 CE1 Distance: 4.115281 - Hydrophobic, 40 - H PRO 99 CG VS B PHE 486 CE2 Distance: 5.194113 - Hydrophobic, 41 - H PRO 99 CG VS B PHE 486 CZ Distance: 3.992283 - Hydrophobic, 42 - H GLY 104 O VS B TYR 473 OH Distance: 2.852242 - Hydrogen Bonds, 43 - H SER 105 N VS B ALA 475 O Distance: 4.885588 - Hydrogen Bonds, 44 - H CYS 106 N VS B ALA 475 O Distance: 2.891039 - Hydrogen Bonds, 45 - H CYS 106 CB VS B ALA 475 CB Distance: 4.157039 - Hydrophobic, 46 - H CYS 106 SG VS B ALA 475 O Distance: 4.547110 - Hydrogen Bonds, 47 - H CYS 106 O VS B GLY 476 N Distance: 4.349306 - Hydrogen Bonds, 48 - H CYS 106 O VS B SER 477 N Distance: 4.875355 - Hydrogen Bonds, 49 - H CYS 106 O VS B ASN 487 ND2 Distance: 4.851984 - Hydrogen Bonds, 50 - H SER 107 O VS B ASN 487 ND2 Distance: 2.932257 - Hydrogen Bonds, 51 - H ASP 108 OD1 VS B GLY 476 N Distance: 4.592035 - Hydrogen Bonds, 52 - H ASP 108 OD1 VS B SER 477 N Distance: 2.938628 - Hydrogen Bonds, 53 - H ASP 108 OD2 VS B SER 477 N Distance: 3.635515 - Hydrogen Bonds, 54 - H ASP 108 CB VS B THR 478 CG2 Distance: 5.115614 - Hydrophobic, 55 - H ASP 108 OD1 VS B THR 478 N Distance: 4.093063 - Hydrogen Bonds, 56 - H ASP 108 OD1 VS B THR 478 OG1 Distance: 4.298841 - Hydrogen Bonds, 57 - H ASP 108 OD2 VS B THR 478 N Distance: 4.735977 - Hydrogen Bonds, 58 - H ASP 108 OD1 VS B ASN 487 ND2 Distance: 3.823300 - Hydrogen Bonds, 59 - H PHE 110 CG VS B PHE 486 CG Distance: 4.695213 - Aromatic Stacking, 60 - H PHE 110 CG VS B PHE 486 CE1 Distance: 4.894464 - Hydrophobic, 61 - H PHE 110 CG VS B PHE 486 CZ Distance: 4.801126 - Hydrophobic, 62 - H PHE 110 CD1 VS B PHE 486 CD1 Distance: 5.022314 - Hydrophobic, 63 - H PHE 110 CD1 VS B PHE 486 CD2 Distance: 5.457562 - Hydrophobic, 64 - H PHE 110 CD1 VS B PHE 486 CE1 Distance: 4.391752 - Hydrophobic, 65 - H PHE 110 CD1 VS B PHE 486 CE2 Distance: 4.878840 - Hydrophobic, 66 - H PHE 110 CD1 VS B PHE 486 CZ Distance: 4.307116 - Hydrophobic, 67 - H PHE 110 CD2 VS B PHE 486 CE1 Distance: 4.685379 - Hydrophobic, 68 - H PHE 110 CD2 VS B PHE 486 CZ Distance: 4.877308 - Hydrophobic, 69 - H PHE 110 CE1 VS B PHE 486 CG Distance: 4.579534 - Hydrophobic, 70 - H PHE 110 CE1 VS B PHE 486 CD1 Distance: 3.972170 - Hydrophobic, 71 - H PHE 110 CE1 VS B PHE 486 CD2 Distance: 4.799862 - Hydrophobic, 72 - H PHE 110 CE1 VS B PHE 486 CE1 Distance: 3.591967 - Hydrophobic, 73 - H PHE 110 CE1 VS B PHE 486 CE2 Distance: 4.486160 - Hydrophobic, 74 - H PHE 110 CE1 VS B PHE 486 CZ Distance: 3.879912 - Hydrophobic, 75 - H PHE 110 CE2 VS B PHE 486 CD1 Distance: 4.700241 - Hydrophobic, 76 - H PHE 110 CE2 VS B PHE 486 CE1 Distance: 3.954852 - Hydrophobic, 77 - H PHE 110 CE2 VS B PHE 486 CZ Distance: 4.512400 - Hydrophobic, 78 - H PHE 110 CZ VS B PHE 486 CG Distance: 4.739508 - Hydrophobic, 79 - H PHE 110 CZ VS B PHE 486 CD1 Distance: 3.779101 - Hydrophobic, 80 - H PHE 110 CZ VS B PHE 486 CD2 Distance: 5.219375 - Hydrophobic, 81 - H PHE 110 CZ VS B PHE 486 CE1 Distance: 3.336779 - Hydrophobic, 82 - H PHE 110 CZ VS B PHE 486 CE2 Distance: 4.906776 - Hydrophobic, 83 - H PHE 110 CZ VS B PHE 486 CZ Distance: 4.001603 - Hydrophobic,