VTR

13 main matches found (22 matches in total )

Execution time: 17.0 seconds

Match RMSD = 0.84

VTR = 0.04

Average AVD = 0.74 Å

Parameters

Chains(6XCM.pdb ): B versus N

Chains(6XCM_uk_mut.pdb ) B versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XCM 3368 13 0 13 0 0 0 26
B6XCM_uk_mut 3367 13 1 15 0 0 0 29

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-N B-N F456 L100 F456 L100 Hydrophobic Hydrophobic 1.46 View
B-N B-N Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.55 View
B-N B-N Y453 W98 Y453 W98 Hydrophobic Hydrophobic 0.8 View
B-N B-N Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-N B-N F456 L100 F456 L100 Hydrophobic Hydrophobic 1.57 View
B-N B-N R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.3 View
B-N B-N K458 S30 K458 S30 Hydrogen Bonds Hydrogen Bonds 0.97 View
B-N B-N L455 E99 L455 W98 Hydrophobic Hydrophobic 1.68 View
B-N B-N K417 W98 K417 W98 Hydrophobic Hydrophobic 0.84 View
B-N B-N K417 Y52 K417 Y52 Hydrophobic Hydrophobic 0.59 View
B-N B-N K417 Y52 K417 Y52 Hydrophobic Hydrophobic 0.65 View
B-N B-N Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.64 View
B-N B-N K417 Y52 K417 Y52 Hydrophobic Hydrophobic 0.71 View
B-N B-N K458 S53 K458 S53 Hydrogen Bonds Hydrogen Bonds 0.24 View
B-N B-N Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-N B-N K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.19 View
B-N B-N L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.57 View
B-N B-N Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.44 View
B-N B-N K458 S30 K458 S30 Hydrogen Bonds Hydrogen Bonds 0.63 View
B-N B-N A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.82 View
B-N B-N Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-N B-N L455 E99 L455 E99 Hydrophobic Hydrophobic 1.02 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XCM | 6XCM_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XCM B-N F456 L100 Hydrophobic 4.34 View
6XCM B-N F456 L100 Hydrophobic 4.18 View
6XCM B-N F456 L100 Hydrophobic 4.20 View
6XCM B-N F456 L100 Hydrophobic 3.56 View
6XCM_uk_mut B-N K417 E96 Attractive 5.68 View
6XCM_uk_mut B-N D420 S56 Hydrogen Bonds 3.36 View
6XCM_uk_mut B-N L455 W98 Hydrophobic 4.20 View
6XCM_uk_mut B-N L455 W98 Hydrophobic 4.44 View
6XCM_uk_mut B-N F456 Y33 Hydrophobic 4.47 View
6XCM_uk_mut B-N F456 Y33 Hydrophobic 4.11 View
6XCM_uk_mut B-N A475 S31 Hydrogen Bonds 2.75 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph