VIRAL PROTEIN/IMMUNE SYSTEM STRUCTURE OF THE SARS-COV-2 SPIKE GLYCOPROTEIN IN COMPLEX WITH THE C105 NEUTRALIZING ANTIBODY FAB FRAGMENT (STATE 1): 0 - B GLN 409 NE2 VS N TYR 58 OH Distance: 4.532413 - Hydrogen Bonds, 1 - B THR 415 OG1 VS N SER 56 OG Distance: 4.831988 - Hydrogen Bonds, 2 - B LYS 417 CB VS N TYR 52 CD2 Distance: 4.995661 - Hydrophobic, 3 - B LYS 417 CB VS N TYR 52 CE2 Distance: 4.510115 - Hydrophobic, 4 - B LYS 417 CG VS N TYR 52 CD2 Distance: 4.262687 - Hydrophobic, 5 - B LYS 417 CG VS N TYR 52 CE2 Distance: 3.439447 - Hydrophobic, 6 - B LYS 417 CD VS N TYR 52 CD2 Distance: 5.284444 - Hydrophobic, 7 - B LYS 417 CD VS N TYR 52 CE2 Distance: 4.227166 - Hydrophobic, 8 - B LYS 417 NZ VS N GLU 96 OE1 Distance: 6.002516 - Attractive, 9 - B LYS 417 NZ VS N GLU 96 OE2 Distance: 6.152206 - Attractive, 10 - B LYS 417 CG VS N TRP 98 CZ2 Distance: 5.285564 - Hydrophobic, 11 - B LYS 417 CD VS N TRP 98 CZ2 Distance: 3.778789 - Hydrophobic, 12 - B LYS 417 CD VS N TRP 98 CH2 Distance: 4.928558 - Hydrophobic, 13 - B ASP 420 OD2 VS N SER 56 OG Distance: 4.080287 - Hydrogen Bonds, 14 - B TYR 421 CE2 VS N TYR 33 CE1 Distance: 5.030824 - Hydrophobic, 15 - B TYR 421 OH VS N SER 53 N Distance: 4.338381 - Hydrogen Bonds, 16 - B TYR 421 OH VS N SER 53 O Distance: 4.798060 - Hydrogen Bonds, 17 - B TYR 421 OH VS N SER 53 OG Distance: 2.183390 - Hydrogen Bonds, 18 - B TYR 421 OH VS N GLY 54 N Distance: 3.187850 - Hydrogen Bonds, 19 - B TYR 453 CD2 VS N TRP 98 CH2 Distance: 5.436605 - Hydrophobic, 20 - B TYR 453 CE1 VS N TRP 98 CZ3 Distance: 5.330854 - Hydrophobic, 21 - B TYR 453 CE1 VS N TRP 98 CH2 Distance: 4.834291 - Hydrophobic, 22 - B TYR 453 CE2 VS N TRP 98 CZ2 Distance: 4.971888 - Hydrophobic, 23 - B TYR 453 CE2 VS N TRP 98 CZ3 Distance: 5.305548 - Hydrophobic, 24 - B TYR 453 CE2 VS N TRP 98 CH2 Distance: 4.425978 - Hydrophobic, 25 - B TYR 453 OH VS N GLU 99 OE2 Distance: 4.298881 - Hydrogen Bonds, 26 - B LEU 455 O VS N TYR 33 OH Distance: 2.187021 - Hydrogen Bonds, 27 - B LEU 455 CG VS N TYR 33 CE2 Distance: 5.116836 - Hydrophobic, 28 - B LEU 455 CD1 VS N TYR 33 CE2 Distance: 5.349120 - Hydrophobic, 29 - B LEU 455 CD1 VS N TRP 98 CZ2 Distance: 4.566857 - Hydrophobic, 30 - B LEU 455 CD1 VS N TRP 98 CH2 Distance: 4.939150 - Hydrophobic, 31 - B LEU 455 CD2 VS N TRP 98 CZ2 Distance: 5.195233 - Hydrophobic, 32 - B LEU 455 CD2 VS N TRP 98 CH2 Distance: 5.089218 - Hydrophobic, 33 - B LEU 455 CG VS N GLU 99 CB Distance: 5.354014 - Hydrophobic, 34 - B LEU 455 CG VS N GLU 99 CG Distance: 5.238695 - Hydrophobic, 35 - B LEU 455 CD1 VS N GLU 99 CG Distance: 5.496329 - Hydrophobic, 36 - B LEU 455 CD2 VS N GLU 99 CB Distance: 4.271563 - Hydrophobic, 37 - B LEU 455 CD2 VS N GLU 99 CG Distance: 3.952621 - Hydrophobic, 38 - B PHE 456 N VS N TYR 33 OH Distance: 4.228075 - Hydrogen Bonds, 39 - B PHE 456 CG VS N TYR 33 CG Distance: 6.524721 - Aromatic Stacking, 40 - B PHE 456 CD1 VS N TYR 33 CE1 Distance: 5.402389 - Hydrophobic, 41 - B PHE 456 CD1 VS N TYR 33 CE2 Distance: 5.027442 - Hydrophobic, 42 - B PHE 456 CE1 VS N TYR 33 CE2 Distance: 4.676458 - Hydrophobic, 43 - B PHE 456 CD1 VS N LEU 100 CD1 Distance: 4.629035 - Hydrophobic, 44 - B PHE 456 CE1 VS N LEU 100 CG Distance: 4.349449 - Hydrophobic, 45 - B PHE 456 CE1 VS N LEU 100 CD1 Distance: 3.436489 - Hydrophobic, 46 - B PHE 456 CE1 VS N LEU 100 CD2 Distance: 4.180353 - Hydrophobic, 47 - B PHE 456 CE2 VS N LEU 100 CG Distance: 5.395216 - Hydrophobic, 48 - B PHE 456 CE2 VS N LEU 100 CD1 Distance: 5.070923 - Hydrophobic, 49 - B PHE 456 CE2 VS N LEU 100 CD2 Distance: 4.574661 - Hydrophobic, 50 - B PHE 456 CZ VS N LEU 100 CG Distance: 4.201027 - Hydrophobic, 51 - B PHE 456 CZ VS N LEU 100 CD1 Distance: 3.729989 - Hydrophobic, 52 - B PHE 456 CZ VS N LEU 100 CD2 Distance: 3.565657 - Hydrophobic, 53 - B ARG 457 N VS N SER 53 OG Distance: 4.512645 - Hydrogen Bonds, 54 - B ARG 457 O VS N SER 53 OG Distance: 2.629920 - Hydrogen Bonds, 55 - B ARG 457 O VS N GLY 54 N Distance: 4.781299 - Hydrogen Bonds, 56 - B LYS 458 NZ VS N THR 28 OG1 Distance: 4.764868 - Hydrogen Bonds, 57 - B LYS 458 NZ VS N SER 30 O Distance: 2.359889 - Hydrogen Bonds, 58 - B LYS 458 NZ VS N SER 30 OG Distance: 3.509721 - Hydrogen Bonds, 59 - B LYS 458 NZ VS N SER 31 OG Distance: 4.443404 - Hydrogen Bonds, 60 - B LYS 458 N VS N SER 53 OG Distance: 4.707563 - Hydrogen Bonds, 61 - B LYS 458 O VS N SER 53 OG Distance: 3.587660 - Hydrogen Bonds, 62 - B LYS 458 O VS N GLY 54 N Distance: 3.194099 - Hydrogen Bonds, 63 - B LYS 458 NZ VS N ARG 71 CZ Distance: 6.832144 - Repulsive, 64 - B LYS 458 NZ VS N ARG 71 NH1 Distance: 6.772211 - Repulsive, 65 - B LYS 458 NZ VS N ARG 71 NH2 Distance: 6.890995 - Repulsive, 66 - B TYR 473 OH VS N SER 30 O Distance: 4.306625 - Hydrogen Bonds, 67 - B TYR 473 OH VS N SER 31 N Distance: 4.443777 - Hydrogen Bonds, 68 - B TYR 473 OH VS N SER 31 O Distance: 2.799605 - Hydrogen Bonds, 69 - B TYR 473 OH VS N SER 31 OG Distance: 2.515338 - Hydrogen Bonds, 70 - B TYR 473 OH VS N ASN 32 N Distance: 4.717698 - Hydrogen Bonds, 71 - B TYR 473 OH VS N SER 53 OG Distance: 4.853606 - Hydrogen Bonds, 72 - B GLN 474 O VS N SER 31 OG Distance: 2.979920 - Hydrogen Bonds, 73 - B ALA 475 O VS N THR 28 N Distance: 4.722150 - Hydrogen Bonds, 74 - B ALA 475 N VS N SER 31 OG Distance: 4.408855 - Hydrogen Bonds, 75 - B ALA 475 O VS N SER 31 OG Distance: 4.157499 - Hydrogen Bonds, 76 - B ALA 475 O VS N ASN 32 ND2 Distance: 2.770312 - Hydrogen Bonds, 77 - B GLY 476 O VS N THR 28 N Distance: 4.638802 - Hydrogen Bonds, 78 - B GLY 476 N VS N SER 31 OG Distance: 4.598730 - Hydrogen Bonds, 79 - B GLY 476 O VS N SER 31 OG Distance: 4.660403 - Hydrogen Bonds, 80 - B PHE 486 CE2 VS N VAL 2 CG2 Distance: 5.429619 - Hydrophobic, 81 - B PHE 486 CZ VS N VAL 2 CG2 Distance: 5.247116 - Hydrophobic, 82 - B ASN 487 ND2 VS N GLY 26 O Distance: 4.153069 - Hydrogen Bonds, 83 - B TYR 489 OH VS N ARG 94 NH2 Distance: 3.664856 - Hydrogen Bonds, 84 - B TYR 489 CD1 VS N LEU 100 CD2 Distance: 5.461183 - Hydrophobic, 85 - B TYR 489 CE1 VS N LEU 100 CD2 Distance: 5.140221 - Hydrophobic, 86 - B GLN 493 NE2 VS N GLU 99 OE1 Distance: 4.310021 - Hydrogen Bonds, 87 - B GLN 493 NE2 VS N GLU 99 OE2 Distance: 4.797401 - Hydrogen Bonds, 88 - B TYR 495 CD1 VS N TRP 98 CH2 Distance: 5.328664 - Hydrophobic, 89 - B TYR 495 CE1 VS N TRP 98 CH2 Distance: 4.948879 - Hydrophobic, 90 - B TYR 505 CG VS N TRP 98 CG Distance: 6.341109 - Aromatic Stacking, 91 - B TYR 505 CD1 VS N TRP 98 CZ3 Distance: 5.348765 - Hydrophobic, 92 - B TYR 505 CE1 VS N TRP 98 CD2 Distance: 5.356752 - Hydrophobic, 93 - B TYR 505 CE1 VS N TRP 98 CE3 Distance: 4.966785 - Hydrophobic, 94 - B TYR 505 CE1 VS N TRP 98 CZ3 Distance: 5.095498 - Hydrophobic,