VTR

32 main matches found (65 matches in total )

Execution time: 31.0 seconds

Match RMSD = 0.02

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7L0N.pdb ): R versus E

Chains(7L0N_brazil_mut.pdb ) R versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L0N 3304 33 5 30 0 0 2 70
B7L0N_brazil_mut 3304 42 2 30 0 0 4 78

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-R E-R G354 G502 G354 G502 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
E-R E-R R357 T500 R357 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R H34 L455 H34 L455 Hydrophobic Hydrophobic 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R E37 Y505 E37 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R Y41 T500 Y41 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R H34 Q493 H34 Q493 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R D38 Y449 D38 Y449 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R R393 Y505 R393 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
E-R E-R Q42 G446 Q42 G446 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y83 N487 Y83 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R Q325 K439 Q325 K439 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R D38 Q498 D38 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.0 View
E-R E-R H34 Y453 H34 Y453 Aromatic Stacking Aromatic Stacking 0.0 View
E-R E-R K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
E-R E-R T27 Y489 T27 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R H34 Y453 H34 Y453 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R D38 Y449 D38 Y449 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K353 Q498 K353 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R T27 Y473 T27 Y473 Hydrophobic Hydrophobic 0.0 View
E-R E-R S19 A475 S19 A475 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R E329 K439 E329 K439 Attractive Attractive 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R K353 G502 K353 G502 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
E-R E-R M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R Q24 A475 Q24 A475 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K353 G496 K353 G496 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y41 T500 Y41 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R F28 Y489 F28 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R E35 Q493 E35 Q493 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y83 F486 Y83 F486 Aromatic Stacking Aromatic Stacking 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R Y83 Y489 Y83 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
E-R E-R H34 Q493 H34 Q493 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Q42 Y449 Q42 Y449 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.0 View
E-R E-R Q42 Q498 Q42 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R E37 Y505 E37 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
E-R E-R Q24 N487 Q24 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
E-R E-R Y41 N501 Y41 Y501 Hydrogen Bonds Hydrogen Bonds 0.14 View
E-R E-R E329 K439 E329 K439 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
E-R E-R Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L0N | 7L0N_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L0N E-R D30 K417 Attractive 5.81 View
7L0N E-R D30 K417 Attractive, Hydrogen Bonds 3.77 View
7L0N E-R K31 E484 Attractive 5.01 View
7L0N_brazil_mut E-R H34 Y453 Aromatic Stacking 5.87 View
7L0N_brazil_mut E-R Y41 Y501 Aromatic Stacking 5.05 View
7L0N_brazil_mut E-R Y41 Y501 Hydrophobic 3.94 View
7L0N_brazil_mut E-R Y41 Y501 Hydrophobic 4.04 View
7L0N_brazil_mut E-R Y41 Y501 Hydrophobic 4.37 View
7L0N_brazil_mut E-R Y41 Y501 Hydrophobic 3.22 View
7L0N_brazil_mut E-R K353 Y501 Hydrophobic 3.77 View
7L0N_brazil_mut E-R K353 Y501 Hydrophobic 3.16 View
7L0N_brazil_mut E-R K353 Y501 Hydrophobic 3.92 View
7L0N_brazil_mut E-R K353 Y501 Hydrophobic 3.86 View
7L0N_brazil_mut E-R K353 Y501 Hydrophobic 3.53 View
7L0N_brazil_mut E-R K353 Y501 Hydrogen Bonds 3.44 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph