6D94-B-A

PDB Title CRYSTAL STRUCTURE OF PPAR GAMMA IN COMPLEX WITH MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1
Resolution (Å) 1.900
Classification DNA BINDING PROTEIN/AGONIST

Protein

Description Peroxisome proliferator-activated receptor gamma
Organism Homo sapiens
Chain A
Length 272
Binding Area (Å2) 652.48
Molecular Weight -
Aromaticity 0.08
Instability -
Isoelectric Point 5.75
Sequence ESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLYX

Peptide

Description Mediator of RNA polymerase II transcription subunit 1
Organism Homo sapiens
Chain B
Length 15
Binding Area (Å2) 692.25
Hydrophobic (% a.a.)
46%
Molecular Weight 1726.03
Aromaticity 0.00
Instability -14.59
Isoelectric Point 8.60
Sequence GNTKNHPMLMNLLKD

Clustering Classification

Sequence cluster S 184
Contact cluster C9
Interface cluster I8

Similar complexes

Is the complex classified in the same cluster?

Complex Sequence cluster
(S184) 		Contact cluster
(C9) 		Interface cluster
(I8)
5ycn-B-A
6izm-C-A
2hfp-B-A
3qt0-C-A
5ycp-B-A
6izn-C-A
2npa-B-A
3b1m-B-A
3sp6-B-A
5z5s-C-A
2npa-D-C
3cs8-B-A
3t03-C-A
5dvc-B-A
5z6s-C-A
3cwd-C-A
3t03-D-B
5dwl-B-A
1fm6-E-D
3cwd-D-B
3u9q-B-A
4f9m-C-A
1fm6-Y-X
2p54-B-A
3et1-P-A
3v9t-C-A
4hee-Y-X
1fm9-E-D
3et3-P-A
3v9v-C-A
5gtn-B-A
6ad9-B-A
1k74-E-D
3fei-Z-A
3v9y-B-A
5gto-B-A
6fzf-C-A
3fej-B-A
5gtp-B-A
6fzf-D-B
3fur-H-A
5ji0-E-D
5two-B-A
6fzj-C-A
3g8i-Z-A
3vn2-C-A
6fzj-D-B
3g9e-B-A
6fzp-C-A
3h0a-E-D
4y29-B-A
1zgy-B-A
3kmg-B-A
2fvj-B-A
3kmg-E-D
2gtk-B-A
3lmp-C-A
6onj-C-A
1rdt-E-D
6k0t-B-A
6k0t-D-C
6ms7-B-A
6oni-D-B
6pdz-C-B
6pdz-D-A
6icj-B-A
6ijs-B-A
6ilq-B-A
3aun-B-A
3vt4-C-A
3wt5-C-A
5b5b-C-A
3vt5-C-A
3wt6-C-A
5b5b-F-D
6jez-C-A
3vt6-C-A
3wt7-C-A
2o4j-C-A
3vt7-C-A
3wtq-C-A
5zwf-C-A
2o4r-C-A
3vt8-C-A
5gic-C-A
5zwh-C-A
6k5o-C-A
3vt9-C-A
5gid-C-A
5zwi-C-A
2zfx-C-A
3vtb-B-A
4j24-K-C
2zl9-C-A
3vtc-B-A
4j24-I-A
2zla-C-A
3vjs-C-A
3w0g-C-A
4j24-J-B
1rjk-C-A
2zlc-C-A
3vjt-C-A
3w0h-C-A
4j24-L-D
1rk3-C-A
2zmh-C-A
3w0i-C-A
4j26-I-A
5xpm-C-A
1rkg-C-A
2zmi-C-A
3vrt-C-A
3w0j-C-A
4j26-J-B
5xpn-C-A
1rkh-C-A
2zmj-C-A
3vru-C-A
3w5p-C-A
5xpo-C-A
2zxn-C-A
3vrv-C-A
3w5q-C-A
4ynk-C-A
5xzf-C-A
3a2h-B-A
3vrw-C-A
3w5r-C-A
5awj-C-A
5xzh-C-A
3afr-C-A
3vt3-C-A
3w5t-C-A
5b41-C-A