PROPEDIA is a database of peptide-protein complexes clusterized in three methodologies: based on peptide sequences; based on structure interface; and based on binding sites. PROPEDIA main goal is to give new insights into peptide design of biotechnological interests.
# Created by:
Pedro Martins / Diego Mariano / Raquel C. de Melo-Minardi
# Backend/frontend:
Diego Mariano
Martins, P.M., Santos, L.H., Mariano, D. et al. Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. BMC Bioinformatics 22, 1 (2021). https://doi.org/10.1186/s12859-020-03881-z
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Please, cite Propedia in your publication
We kindly ask that you cite both the original article and the most recent published article from the database. You can cite the other articles if you use data and functionalities from specific versions.
Martins, P.M., Santos, L.H., Mariano, D. et al. Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. BMC Bioinformatics 22, 1 (2021). doi: 10.1186/s12859-020-03881-z
Martins P, Mariano D, Carvalho FC, Bastos LL, Moraes L, Paixão V and Cardoso de Melo-Minardi R (2023). Propedia v2.3: A novel representation approach for the peptide-protein interaction database using graph-based structural signatures. Front. Bioinform. 3:1103103. doi: 10.3389/fbinf.2023.1103103
