VTR

11 main matches found (26 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.42

VTR = 0.01

Average AVD = 0.38 Å

Parameters

Chains(7NX8.pdb ): E versus L

Chains(7NX8_uk_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NX8 1049 15 1 9 0 0 1 26
B7NX8_uk_mut 1049 17 1 11 0 0 1 30

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-E L-E L95 F377 L95 F377 Hydrophobic Hydrophobic 0.74 View
L-E L-E Y32 G381 Y32 G381 Hydrogen Bonds Hydrogen Bonds 0.25 View
L-E L-E L95 P384 L95 P384 Hydrophobic Hydrophobic 0.58 View
L-E L-E L95 F377 L95 F377 Hydrophobic Hydrophobic 0.59 View
L-E L-E Y92 Y380 Y92 Y380 Hydrophobic Hydrophobic 0.28 View
L-E L-E Y92 Y380 Y92 Y380 Aromatic Stacking Aromatic Stacking 0.11 View
L-E L-E Y92 Y380 Y92 Y380 Hydrophobic Hydrophobic 0.36 View
L-E L-E D1 K378 D1 K378 Attractive Attractive 0.39 View
L-E L-E Y92 D427 Y92 D427 Hydrogen Bonds Hydrogen Bonds 0.44 View
L-E L-E Y92 F429 Y92 F429 Hydrogen Bonds Hydrogen Bonds 0.29 View
L-E L-E T94 C379 T94 C379 Hydrogen Bonds Hydrogen Bonds 0.11 View
L-E L-E Y92 G381 Y92 G381 Hydrogen Bonds Hydrogen Bonds 0.15 View
L-E L-E Y92 P412 Y92 P412 Hydrophobic Hydrophobic 0.41 View
L-E L-E Y92 F429 Y92 F429 Hydrogen Bonds Hydrogen Bonds 0.33 View
L-E L-E L95 P384 L95 P384 Hydrophobic Hydrophobic 0.74 View
L-E L-E Y92 Y380 Y92 Y380 Hydrophobic Hydrophobic 0.3 View
L-E L-E Y92 P412 Y92 P412 Hydrophobic Hydrophobic 0.47 View
L-E L-E T94 V382 T94 V382 Hydrogen Bonds Hydrogen Bonds 0.25 View
L-E L-E L95 P384 L95 P384 Hydrophobic Hydrophobic 0.51 View
L-E L-E T94 C379 T94 C379 Hydrogen Bonds Hydrogen Bonds 0.26 View
L-E L-E Y92 Y380 Y92 Y380 Hydrophobic Hydrophobic 0.26 View
L-E L-E Y92 Y380 Y92 Y380 Hydrophobic Hydrophobic 0.31 View
L-E L-E L95 F377 L95 F377 Hydrophobic Hydrophobic 0.74 View
L-E L-E L95 C379 L95 C379 Hydrophobic Hydrophobic 0.36 View
L-E L-E Q27 P412 Q27 P412 Hydrogen Bonds Hydrogen Bonds 0.35 View
L-E L-E Y92 Y380 Y92 Y380 Hydrophobic Hydrophobic 0.34 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NX8 | 7NX8_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NX8_uk_mut L-E Y92 Y380 Hydrophobic 4.31 View
7NX8_uk_mut L-E Y92 D428 Hydrogen Bonds 3.11 View
7NX8_uk_mut L-E S93 C379 Hydrogen Bonds 3.79 View
7NX8_uk_mut L-E L95 F377 Hydrophobic 4.00 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph