VTR

8 main matches found (9 matches in total )

Execution time: 26.0 seconds

Match RMSD = 0.71

VTR = 0.06

Average AVD = 0.68 Å

Parameters

Chains(7NDD.pdb ): A versus F

Chains(7NDD_uk_mut.pdb ) A versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NDD 3852 2 3 5 0 0 1 11
B7NDD_uk_mut 3846 5 4 6 0 0 0 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-F A-F D253 Y108 D253 Y108 Hydrogen Bonds Hydrogen Bonds 0.5 View
A-F A-F Q14 Y32 Q14 Y32 Hydrogen Bonds Hydrogen Bonds 0.64 View
A-F A-F Y145 Y53 Y145 Y53 Hydrogen Bonds Hydrogen Bonds 1.14 View
A-F A-F H146 D54 H146 D54 Attractive Attractive 0.83 View
A-F A-F H146 D54 H146 D54 Attractive Attractive 0.39 View
A-F A-F H146 D54 H146 D54 Attractive Attractive 0.72 View
A-F A-F K147 N57 K147 N57 Hydrogen Bonds Hydrogen Bonds 0.86 View
A-F A-F K147 G56 K147 G56 Hydrogen Bonds Hydrogen Bonds 0.61 View
A-F A-F Q14 Y32 Q14 Y32 Hydrophobic Hydrophobic 0.41 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NDD | 7NDD_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NDD A-F Y144 Y53 Aromatic Stacking 5.28 View
7NDD A-F Y144 Y53 Hydrophobic 3.96 View
7NDD_uk_mut A-F K147 D54 Attractive 5.41 View
7NDD_uk_mut A-F F157 T28 Hydrophobic 4.33 View
7NDD_uk_mut A-F F157 T28 Hydrophobic 4.10 View
7NDD_uk_mut A-F F157 T28 Hydrophobic 4.38 View
7NDD_uk_mut A-F D253 Y108 Hydrophobic 4.31 View
7NDD_uk_mut A-F D253 Y108 Hydrogen Bonds 3.30 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph