VTR

13 main matches found (35 matches in total )

Execution time: 49.0 seconds

Match RMSD = 0.29

VTR = 0.01

Average AVD = 0.27 Å

Parameters

Chains(7ND8.pdb ): B versus H

Chains(7ND8_uk_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND8 3447 22 8 7 0 0 1 38
B7ND8_uk_mut 3444 31 8 7 0 0 1 47

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H L455 F104 L455 F104 Hydrophobic Hydrophobic 0.18 View
B-H B-H F456 L105 F456 L105 Hydrophobic Hydrophobic 0.38 View
B-H B-H F490 H56 F490 H56 Hydrophobic Hydrophobic 0.34 View
B-H B-H F456 L105 F456 L105 Hydrophobic Hydrophobic 0.4 View
B-H B-H E484 R52 E484 R52 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.34 View
B-H B-H F490 H56 F490 H56 Hydrophobic Hydrophobic 0.26 View
B-H B-H E484 Y50 E484 Y50 Hydrogen Bonds Hydrogen Bonds 0.31 View
B-H B-H L455 F104 L455 F104 Hydrophobic Hydrophobic 0.48 View
B-H B-H Y489 L105 Y489 L105 Hydrophobic Hydrophobic 0.47 View
B-H B-H E484 R52 E484 R52 Attractive Attractive 0.27 View
B-H B-H E484 R52 E484 R52 Attractive Attractive 0.24 View
B-H B-H V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.24 View
B-H B-H L455 F104 L455 F104 Hydrophobic Hydrophobic 0.41 View
B-H B-H F490 H56 F490 H56 Hydrophobic Hydrophobic 0.32 View
B-H B-H E484 Y59 E484 Y59 Hydrogen Bonds Hydrogen Bonds 0.09 View
B-H B-H E484 R52 E484 R52 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.17 View
B-H B-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.2 View
B-H B-H V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.24 View
B-H B-H F486 W107 F486 W107 Hydrophobic Hydrophobic 0.12 View
B-H B-H Y489 L105 Y489 L105 Hydrophobic Hydrophobic 0.53 View
B-H B-H F486 W107 F486 W107 Hydrophobic Hydrophobic 0.16 View
B-H B-H F456 F104 F456 F104 Hydrophobic Hydrophobic 0.23 View
B-H B-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.2 View
B-H B-H E484 R52 E484 R52 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.14 View
B-H B-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.19 View
B-H B-H E484 R52 E484 R52 Attractive Attractive 0.29 View
B-H B-H E484 R52 E484 R52 Attractive Attractive 0.32 View
B-H B-H E484 R52 E484 R52 Attractive Attractive 0.37 View
B-H B-H E484 Y59 E484 Y59 Hydrophobic Hydrophobic 0.13 View
B-H B-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.24 View
B-H B-H F456 F104 F456 F104 Hydrophobic Hydrophobic 0.22 View
B-H B-H E484 T57 E484 T57 Hydrogen Bonds Hydrogen Bonds 0.21 View
B-H B-H F490 H56 F490 H56 Hydrophobic Hydrophobic 0.28 View
B-H B-H G482 Y59 G482 Y59 Hydrogen Bonds Hydrogen Bonds 0.09 View
B-H B-H F490 H56 F490 H56 Aromatic Stacking Aromatic Stacking 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND8 | 7ND8_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND8_uk_mut B-H L455 F104 Hydrophobic 4.27 View
7ND8_uk_mut B-H L455 F104 Hydrophobic 4.34 View
7ND8_uk_mut B-H F456 F104 Hydrophobic 4.28 View
7ND8_uk_mut B-H V483 Y59 Hydrophobic 4.31 View
7ND8_uk_mut B-H V483 Y59 Hydrophobic 4.40 View
7ND8_uk_mut B-H V483 Y59 Hydrophobic 3.96 View
7ND8_uk_mut B-H V483 Y59 Hydrophobic 4.07 View
7ND8_uk_mut B-H E484 W107 Hydrophobic 4.06 View
7ND8_uk_mut B-H Y489 L105 Hydrophobic 4.19 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph