Execution time: 45.0 seconds
Match RMSD = 0.87
VTR = 0.07
Average AVD = 0.79 Å
Chains(7ND6.pdb ): B versus L
Chains(7ND6_uk_mut.pdb ) B versus L
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND6 | 3409 | 12 | 0 | 16 | 0 | 0 | 1 | 29 |
B7ND6_uk_mut | 3408 | 23 | 0 | 24 | 0 | 0 | 1 | 48 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.95 | View |
B-L | B-L | R403 | N92 | R403 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.23 | View |
B-L | B-L | Q498 | S67 | Q498 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.51 | View |
B-L | B-L | Y453 | N92 | Y453 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.53 | View |
B-L | B-L | N501 | S30 | T500 | S30 | Hydrogen Bonds | Hydrogen Bonds | 1.4 | View |
B-L | B-L | Y505 | I2 | Y505 | I2 | Hydrophobic | Hydrophobic | 1.08 | View |
B-L | B-L | R403 | N92 | R403 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.24 | View |
B-L | B-L | D405 | Y94 | D405 | Y94 | Hydrophobic | Hydrophobic | 0.48 | View |
B-L | B-L | Q409 | Y94 | Q409 | Y94 | Hydrogen Bonds | Hydrogen Bonds | 0.51 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 1.02 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.94 | View |
B-L | B-L | Y505 | I2 | Y505 | I2 | Hydrophobic | Hydrophobic | 1.2 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Aromatic Stacking | 0.65 | View | |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 1.03 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Aromatic Stacking | 0.89 | View |
B-L | B-L | K417 | N92 | K417 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.3 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 1.01 | View |
B-L | B-L | Y505 | Q90 | Y505 | Q90 | Hydrogen Bonds | Hydrogen Bonds | 1.12 | View |
B-L | B-L | Q498 | S30 | Q498 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.46 | View |
B-L | B-L | T500 | G28 | T500 | G28 | Hydrogen Bonds | Hydrogen Bonds | 0.55 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 1.0 | View |
B-L | B-L | Y505 | N92 | Y505 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.99 | View |
B-L | B-L | G496 | S30 | G496 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.44 | View |
B-L | B-L | G502 | G28 | G502 | G28 | Hydrogen Bonds | Hydrogen Bonds | 1.01 | View |
B-L | B-L | Q498 | S67 | Q498 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.59 | View |
B-L | B-L | Y505 | I29 | Y501 | I29 | Hydrophobic | Hydrophobic | 1.75 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 1.11 | View |
B-L | B-L | G496 | Y32 | G496 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.48 | View |
B-L | B-L | D405 | Y94 | D405 | Y94 | Hydrogen Bonds | Hydrogen Bonds | 0.51 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND6_uk_mut | B-L | S494 | Y32 | Hydrogen Bonds | 3.87 | View |
7ND6_uk_mut | B-L | T500 | G28 | Hydrogen Bonds | 3.78 | View |
7ND6_uk_mut | B-L | Y501 | I2 | Hydrophobic | 4.33 | View |
7ND6_uk_mut | B-L | Y501 | I2 | Hydrophobic | 4.03 | View |
7ND6_uk_mut | B-L | Y501 | I2 | Hydrophobic | 3.10 | View |
7ND6_uk_mut | B-L | Y501 | Q27 | Hydrophobic | 3.88 | View |
7ND6_uk_mut | B-L | Y501 | Q27 | Hydrophobic | 4.47 | View |
7ND6_uk_mut | B-L | Y501 | Q27 | Hydrophobic | 3.27 | View |
7ND6_uk_mut | B-L | Y501 | Q27 | Hydrophobic | 4.39 | View |
7ND6_uk_mut | B-L | Y501 | Q27 | Hydrogen Bonds | 2.99 | View |
7ND6_uk_mut | B-L | Y501 | Q27 | Hydrogen Bonds | 3.77 | View |
7ND6_uk_mut | B-L | Y501 | G28 | Hydrogen Bonds | 3.28 | View |
7ND6_uk_mut | B-L | Y501 | I29 | Hydrophobic | 4.06 | View |
7ND6_uk_mut | B-L | G502 | Q27 | Hydrogen Bonds | 3.20 | View |
7ND6_uk_mut | B-L | V503 | Q27 | Hydrogen Bonds | 3.59 | View |
7ND6_uk_mut | B-L | Y505 | I29 | Hydrophobic | 4.30 | View |
7ND6_uk_mut | B-L | Y505 | Y32 | Hydrophobic | 3.44 | View |
7ND6_uk_mut | B-L | Y505 | Y32 | Hydrophobic | 4.03 | View |
7ND6_uk_mut | B-L | Y505 | Y32 | Hydrophobic | 2.95 | View |
7ND6_uk_mut | B-L | Y505 | L91 | Hydrogen Bonds | 3.25 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |