VTR

8 main matches found (18 matches in total )

Execution time: 74.0 seconds

Match RMSD = 0.57

VTR = 0.02

Average AVD = 0.54 Å

Parameters

Chains(7ND4.pdb ): A versus D

Chains(7ND4_uk_mut.pdb ) A versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND4 3729 10 1 5 0 0 2 18
B7ND4_uk_mut 3726 13 2 7 0 0 2 24

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-D A-D Y489 Y111 Y489 Y111 Hydrophobic Hydrophobic 0.48 View
A-D A-D Y489 Y111 Y489 Y111 Aromatic Stacking Aromatic Stacking 0.42 View
A-D A-D F486 Y54 F486 Y54 Hydrophobic Hydrophobic 0.55 View
A-D A-D N487 S102 N487 S102 Hydrogen Bonds Hydrogen Bonds 0.3 View
A-D A-D F486 S33 F486 S33 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-D A-D Y489 Y111 Y489 Y111 Hydrophobic Hydrophobic 0.5 View
A-D A-D F456 Y111 F456 Y111 Hydrophobic Hydrophobic 0.63 View
A-D A-D L455 Y111 L455 Y111 Hydrophobic Hydrophobic 0.54 View
A-D A-D L455 Y111 L455 Y111 Hydrophobic Hydrophobic 0.59 View
A-D A-D Q493 Y111 Q493 Y111 Hydrogen Bonds Hydrogen Bonds 1.15 View
A-D A-D Q493 Y111 Q493 Y111 Hydrophobic Hydrophobic 0.58 View
A-D A-D Y489 Y111 Y489 Y111 Hydrophobic Hydrophobic 0.53 View
A-D A-D F456 Y111 F456 Y111 Hydrophobic Hydrophobic 0.55 View
A-D A-D Y489 G103 Y489 G103 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-D A-D G485 G104 G485 G104 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-D A-D F456 Y112 F456 Y112 Hydrophobic Hydrophobic 0.66 View
A-D A-D E484 K109 E484 K109 Attractive Attractive 0.45 View
A-D A-D F456 Y111 F456 Y111 Aromatic Stacking Aromatic Stacking 0.52 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND4 | 7ND4_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND4_uk_mut A-D L455 Y111 Hydrophobic 4.42 View
7ND4_uk_mut A-D F456 Y112 Hydrophobic 4.05 View
7ND4_uk_mut A-D E484 K109 Attractive 5.91 View
7ND4_uk_mut A-D C488 G104 Hydrogen Bonds 3.80 View
7ND4_uk_mut A-D Y489 S102 Hydrogen Bonds 3.78 View
7ND4_uk_mut A-D Y489 Y111 Hydrophobic 3.90 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph