VTR

12 main matches found (21 matches in total )

Execution time: 22.0 seconds

Match RMSD = 0.68

VTR = 0.04

Average AVD = 0.63 Å

Parameters

Chains(7ND3.pdb ): B versus L

Chains(7ND3_uk_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND3 3194 9 3 10 0 0 1 23
B7ND3_uk_mut 3193 17 3 16 0 0 1 37

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-L B-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.96 View
B-L B-L Y505 D92 Y505 D92 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-L B-L K417 D92 K417 D92 Attractive Attractive 0.28 View
B-L B-L G496 Y32 G496 Y32 Hydrogen Bonds Hydrogen Bonds 0.37 View
B-L B-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.74 View
B-L B-L Y453 D92 Y453 D92 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-L B-L R403 D92 R403 D92 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-L B-L Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.54 View
B-L B-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.51 View
B-L B-L R403 D92 R403 D92 Attractive Attractive 0.34 View
B-L B-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.86 View
B-L B-L Y505 Q90 Y505 Q90 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-L B-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.96 View
B-L B-L K417 D92 K417 D92 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.39 View
B-L B-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.72 View
B-L B-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 1.05 View
B-L B-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 1.01 View
B-L B-L Y505 Y91 Y505 Y91 Hydrogen Bonds Hydrogen Bonds 0.6 View
B-L B-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-L B-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.73 View
B-L B-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.71 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND3 | 7ND3_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND3 B-L G502 D28 Hydrogen Bonds 3.27 View
7ND3_uk_mut B-L Q493 Y91 Hydrogen Bonds 3.18 View
7ND3_uk_mut B-L S494 Y32 Hydrogen Bonds 3.72 View
7ND3_uk_mut B-L G496 N30 Hydrogen Bonds 3.83 View
7ND3_uk_mut B-L T500 D28 Hydrogen Bonds 2.57 View
7ND3_uk_mut B-L Y501 Q27 Hydrophobic 3.88 View
7ND3_uk_mut B-L Y501 Q27 Hydrophobic 4.14 View
7ND3_uk_mut B-L Y501 Q27 Hydrophobic 3.04 View
7ND3_uk_mut B-L Y501 Q27 Hydrophobic 2.94 View
7ND3_uk_mut B-L Y501 Q27 Hydrogen Bonds 3.06 View
7ND3_uk_mut B-L Y501 Q27 Hydrogen Bonds 3.23 View
7ND3_uk_mut B-L Y501 D28 Hydrogen Bonds 3.34 View
7ND3_uk_mut B-L Y501 D28 Hydrophobic 2.93 View
7ND3_uk_mut B-L Y501 D28 Hydrophobic 3.30 View
7ND3_uk_mut B-L Y501 D28 Hydrophobic 2.93 View
7ND3_uk_mut B-L Y501 D28 Hydrophobic 4.07 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph