VTR

16 main matches found (16 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.36

VTR = 0.0

Average AVD = 0.34 Å

Parameters

Chains(7MMO.pdb ): F versus B

Chains(7MMO_uk_mut.pdb ) F versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7MMO 1215 0 12 6 0 0 0 18
B7MMO_uk_mut 1215 0 12 7 0 0 0 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-F B-F D56 R408 D56 R408 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.26 View
B-F B-F E53 R408 E53 R408 Hydrogen Bonds Hydrogen Bonds 0.22 View
B-F B-F E53 R408 E53 R408 Attractive Attractive 0.33 View
B-F B-F D56 R408 D56 R408 Attractive Attractive 0.41 View
B-F B-F S55 R408 S55 R408 Hydrogen Bonds Hydrogen Bonds 0.58 View
B-F B-F D56 R408 D56 R408 Attractive Attractive 0.26 View
B-F B-F D56 R408 D56 R408 Attractive Attractive 0.25 View
B-F B-F E53 R408 E53 R408 Attractive Attractive 0.41 View
B-F B-F D56 R408 D56 R408 Attractive Attractive 0.4 View
B-F B-F D56 R408 D56 R408 Attractive Attractive 0.26 View
B-F B-F E53 R408 E53 R408 Attractive Attractive 0.41 View
B-F B-F D56 R408 D56 R408 Attractive Attractive 0.39 View
B-F B-F D56 R408 D56 R408 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.41 View
B-F B-F E53 R408 E53 R408 Hydrogen Bonds Hydrogen Bonds 0.23 View
B-F B-F E53 R408 E53 R408 Attractive Attractive 0.4 View
B-F B-F G67 T415 G67 T415 Hydrogen Bonds Hydrogen Bonds 0.27 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7MMO | 7MMO_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7MMO_uk_mut B-F D32 Y505 Hydrogen Bonds 3.80 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph