VTR

22 main matches found (22 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.36

VTR = 0.01

Average AVD = 0.32 Å

Parameters

Chains(7M7W.pdb ): R versus L

Chains(7M7W_uk_mut.pdb ) R versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M7W 2136 0 7 14 0 2 0 23
B7M7W_uk_mut 2136 0 7 19 0 2 0 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-R L-R D34 R408 D34 R408 Attractive Attractive 0.31 View
L-R L-R Y33 D405 Y33 D405 Hydrogen Bonds Hydrogen Bonds 0.15 View
L-R L-R L97 V503 L97 V503 Hydrogen Bonds Hydrogen Bonds 0.44 View
L-R L-R S98 Q506 S98 Q506 Hydrogen Bonds Hydrogen Bonds 0.55 View
L-R L-R D34 R408 D34 R408 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.35 View
L-R L-R D34 R408 D34 R408 Attractive Attractive 0.2 View
L-R L-R S98 N501 S98 Y501 Hydrogen Bonds Hydrogen Bonds 0.75 View
L-R L-R G32 R408 G32 R408 Hydrogen Bonds Hydrogen Bonds 0.28 View
L-R L-R G32 R408 G32 R408 Hydrogen Bonds Hydrogen Bonds 0.17 View
L-R L-R K68 R408 K68 R408 Repulsive Repulsive 0.44 View
L-R L-R Y33 D405 Y33 D405 Hydrogen Bonds Hydrogen Bonds 0.35 View
L-R L-R D34 R408 D34 R408 Attractive Attractive 0.25 View
L-R L-R D34 R408 D34 R408 Attractive Attractive 0.24 View
L-R L-R S95 G504 S95 G504 Hydrogen Bonds Hydrogen Bonds 0.33 View
L-R L-R S95 G504 S95 G504 Hydrogen Bonds Hydrogen Bonds 0.21 View
L-R L-R S95 D405 S95 D405 Hydrogen Bonds Hydrogen Bonds 0.18 View
L-R L-R K68 R408 K68 R408 Repulsive Repulsive 0.4 View
L-R L-R D34 R408 D34 R408 Attractive Attractive 0.43 View
L-R L-R D34 R408 D34 R408 Attractive Attractive 0.13 View
L-R L-R S95 D405 S95 D405 Hydrogen Bonds Hydrogen Bonds 0.41 View
L-R L-R Y33 G404 Y33 G404 Hydrogen Bonds Hydrogen Bonds 0.19 View
L-R L-R G32 R408 G32 R408 Hydrogen Bonds Hydrogen Bonds 0.37 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M7W | 7M7W_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M7W_uk_mut L-R S95 Y501 Hydrogen Bonds 3.71 View
7M7W_uk_mut L-R S95 V503 Hydrogen Bonds 3.77 View
7M7W_uk_mut L-R S96 G502 Hydrogen Bonds 3.75 View
7M7W_uk_mut L-R S98 T500 Hydrogen Bonds 3.41 View
7M7W_uk_mut L-R S98 Q506 Hydrogen Bonds 3.58 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph