VTR

11 main matches found (13 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.42

VTR = 0.0

Average AVD = 0.38 Å

Parameters

Chains(7M7W.pdb ): R versus F

Chains(7M7W_uk_mut.pdb ) R versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M7W 2136 2 7 6 0 0 0 15
B7M7W_uk_mut 2136 2 7 6 0 0 0 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
F-R F-R D52 R357 D52 R357 Attractive Attractive 0.3 View
F-R F-R S58 A520 S58 A520 Hydrogen Bonds Hydrogen Bonds 0.33 View
F-R F-R D52 R357 D52 R357 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.36 View
F-R F-R Y51 A520 Y51 A520 Hydrophobic Hydrophobic 0.34 View
F-R F-R D52 R357 D52 R357 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.35 View
F-R F-R S58 H519 S58 H519 Hydrogen Bonds Hydrogen Bonds 0.28 View
F-R F-R Y51 L518 Y51 L518 Hydrophobic Hydrophobic 0.15 View
F-R F-R D52 R357 D52 R357 Attractive Attractive 0.25 View
F-R F-R S58 H519 S58 H519 Hydrogen Bonds Hydrogen Bonds 0.34 View
F-R F-R D52 R357 D52 R357 Attractive Attractive 0.59 View
F-R F-R D52 R357 D52 R357 Attractive Attractive 0.69 View
F-R F-R Y32 F464 Y32 F464 Hydrogen Bonds Hydrogen Bonds 0.28 View
F-R F-R D52 R357 D52 R357 Attractive Attractive 0.7 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M7W | 7M7W_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph