VTR

26 main matches found (61 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.41

VTR = 0.01

Average AVD = 0.37 Å

Parameters

Chains(7M7W.pdb ): R versus E

Chains(7M7W_uk_mut.pdb ) R versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M7W 2136 35 12 14 0 2 2 65
B7M7W_uk_mut 2136 41 13 15 0 2 2 73

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.12 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.22 View
E-R E-R R59 K462 R59 K462 Repulsive Repulsive 0.37 View
E-R E-R Y103 F464 Y103 F464 Hydrophobic Hydrophobic 0.45 View
E-R E-R Y103 Y396 Y103 Y396 Hydrophobic Hydrophobic 0.44 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.25 View
E-R E-R H102 D428 H102 D428 Attractive Attractive Hydrogen Bonds 0.63 View
E-R E-R Y103 F464 Y103 F464 Hydrophobic Hydrophobic 0.44 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.09 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.15 View
E-R E-R S28 D428 S28 D428 Hydrogen Bonds Hydrogen Bonds 0.76 View
E-R E-R R59 E465 R59 E465 Attractive Attractive 0.49 View
E-R E-R Y52 K462 Y52 K462 Hydrophobic Hydrophobic 0.3 View
E-R E-R R59 E465 R59 E465 Attractive Attractive 0.35 View
E-R E-R W100 A520 W100 A520 Hydrophobic Hydrophobic 0.38 View
E-R E-R Y103 S514 Y103 S514 Hydrogen Bonds Hydrogen Bonds 0.33 View
E-R E-R D55 K462 D55 K462 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.52 View
E-R E-R H102 D428 H102 D428 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.48 View
E-R E-R Y52 K462 Y52 K462 Hydrophobic Hydrophobic 0.36 View
E-R E-R Y52 K462 Y52 K462 Hydrophobic Hydrophobic 0.29 View
E-R E-R W33 K462 W33 K462 Hydrophobic Hydrophobic 0.29 View
E-R E-R D57 K462 D57 K462 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.44 View
E-R E-R T104 E516 T104 E516 Hydrogen Bonds Hydrogen Bonds 0.48 View
E-R E-R Y32 D428 Y32 D428 Hydrogen Bonds Hydrogen Bonds 0.71 View
E-R E-R S101 E516 S101 E516 Hydrogen Bonds Hydrogen Bonds 0.31 View
E-R E-R Y103 E516 Y103 E516 Hydrophobic Hydrophobic 0.28 View
E-R E-R D57 K462 D57 K462 Attractive Attractive 0.4 View
E-R E-R R59 E465 R59 E465 Attractive Attractive 0.4 View
E-R E-R Y103 F464 Y103 F464 Hydrophobic Hydrophobic 0.42 View
E-R E-R T104 L518 T104 L518 Hydrophobic Hydrophobic 0.26 View
E-R E-R T104 E516 T104 E516 Hydrogen Bonds Hydrogen Bonds 0.41 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.17 View
E-R E-R Y103 Y396 Y103 Y396 Hydrophobic Hydrophobic 0.41 View
E-R E-R Y103 E516 Y103 E516 Hydrophobic Hydrophobic 0.18 View
E-R E-R Y52 K462 Y52 K462 Hydrophobic Hydrophobic 0.23 View
E-R E-R Y52 K462 Y52 K462 Hydrophobic Hydrophobic 0.32 View
E-R E-R W100 H519 W100 H519 Hydrophobic Hydrophobic 0.27 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.13 View
E-R E-R T104 E516 T104 E516 Hydrogen Bonds Hydrogen Bonds 0.23 View
E-R E-R S31 D427 S31 D427 Hydrogen Bonds Hydrogen Bonds 0.54 View
E-R E-R H102 F464 H102 F464 Hydrophobic Hydrophobic 0.3 View
E-R E-R D55 K462 D55 K462 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.1 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.15 View
E-R E-R H102 D428 H102 D428 Attractive Attractive 0.5 View
E-R E-R Y103 Y396 Y103 Y396 Hydrophobic Hydrophobic 0.32 View
E-R E-R Y103 F464 Y103 F464 Aromatic Stacking Aromatic Stacking 0.25 View
E-R E-R Y105 R355 Y105 R355 Hydrogen Bonds Hydrogen Bonds 0.39 View
E-R E-R H102 F464 H102 F464 Hydrophobic Hydrophobic 0.29 View
E-R E-R Y103 Y396 Y103 Y396 Aromatic Stacking Aromatic Stacking 0.27 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.16 View
E-R E-R Y103 Y396 Y103 Y396 Hydrophobic Hydrophobic 0.32 View
E-R E-R W100 L518 W100 L518 Hydrophobic Hydrophobic 0.14 View
E-R E-R Y103 F464 Y103 F464 Hydrophobic Hydrophobic 0.57 View
E-R E-R R98 D428 R98 D428 Attractive Attractive 0.69 View
E-R E-R R59 K462 R59 K462 Repulsive Repulsive 0.37 View
E-R E-R Y103 F464 Y103 F464 Hydrophobic Hydrophobic 0.44 View
E-R E-R Y103 Y396 Y103 Y396 Hydrogen Bonds Hydrogen Bonds 0.58 View
E-R E-R W33 K462 W33 K462 Hydrophobic Hydrophobic 0.32 View
E-R E-R Y52 K462 Y52 K462 Hydrophobic Hydrophobic 0.33 View
E-R E-R R59 E465 R59 E465 Attractive Attractive 0.4 View
E-R E-R Y103 Y396 Y103 Y396 Hydrophobic Hydrophobic 0.41 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M7W | 7M7W_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M7W_uk_mut E-R W100 L518 Hydrophobic 4.43 View
7M7W_uk_mut E-R W100 L518 Hydrophobic 4.45 View
7M7W_uk_mut E-R H102 D428 Attractive 5.52 View
7M7W_uk_mut E-R Y103 Y396 Hydrophobic 4.19 View
7M7W_uk_mut E-R Y103 Y396 Hydrophobic 4.09 View
7M7W_uk_mut E-R Y103 Y396 Hydrophobic 4.32 View
7M7W_uk_mut E-R Y103 E516 Hydrophobic 4.38 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph