VTR

2 main matches found (27 matches in total )

Execution time: 21.0 seconds

Match RMSD = 0.37

VTR = 0.0

Average AVD = 0.35 Å

Parameters

Chains(7M6H.pdb ): A versus G

Chains(7M6H_uk_mut.pdb ) A versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6H 3440 25 0 0 0 0 2 27
B7M6H_uk_mut 3437 26 0 0 0 0 2 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.22 View
A-G A-G F486 W97 F486 W97 Aromatic Stacking Aromatic Stacking 0.61 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.4 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.37 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.17 View
A-G A-G F486 W97 F486 W97 Hydrophobic Hydrophobic 0.63 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.41 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.22 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.3 View
A-G A-G F486 Y91 F486 Y91 Aromatic Stacking Aromatic Stacking 0.28 View
A-G A-G F486 D32 F486 D32 Hydrophobic Hydrophobic 0.51 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.32 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.28 View
A-G A-G F486 W97 F486 W97 Hydrophobic Hydrophobic 0.49 View
A-G A-G F486 D32 F486 D32 Hydrophobic Hydrophobic 0.45 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.3 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.22 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.31 View
A-G A-G F486 W97 F486 W97 Hydrophobic Hydrophobic 0.43 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.36 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.27 View
A-G A-G F486 W97 F486 W97 Hydrophobic Hydrophobic 0.41 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.2 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.25 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.26 View
A-G A-G F486 W97 F486 W97 Hydrophobic Hydrophobic 0.35 View
A-G A-G F486 Y91 F486 Y91 Hydrophobic Hydrophobic 0.34 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6H | 7M6H_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6H_uk_mut A-G F486 Y91 Hydrophobic 4.42 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph