VTR

6 main matches found (19 matches in total )

Execution time: 17.0 seconds

Match RMSD = 0.58

VTR = 0.06

Average AVD = 0.46 Å

Parameters

Chains(7M6G.pdb ): C versus H

Chains(7M6G_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6G 3368 13 0 6 0 0 0 19
B7M6G_uk_mut 3368 35 0 9 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H N450 Y32 N450 Y32 Hydrophobic Hydrophobic 0.29 View
C-H C-H Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.45 View
C-H C-H V445 V99 V445 V99 Hydrogen Bonds Hydrogen Bonds 0.37 View
C-H C-H Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 1.02 View
C-H C-H N450 S31 N450 S31 Hydrogen Bonds Hydrogen Bonds 0.15 View
C-H C-H K444 P95 K444 P95 Hydrophobic Hydrophobic 0.15 View
C-H C-H N450 Y32 N450 Y32 Hydrophobic Hydrophobic 0.33 View
C-H C-H K444 P95 K444 P95 Hydrophobic Hydrophobic 0.29 View
C-H C-H K444 P95 K444 P95 Hydrophobic Hydrophobic 0.38 View
C-H C-H K444 P95 K444 P95 Hydrogen Bonds Hydrogen Bonds 0.67 View
C-H C-H V445 P95 V445 P95 Hydrophobic Hydrophobic 0.1 View
C-H C-H K444 P95 K444 P95 Hydrophobic Hydrophobic 0.41 View
C-H C-H Y449 S31 Y449 S31 Hydrogen Bonds Hydrogen Bonds 0.17 View
C-H C-H K444 Y32 K444 Y32 Hydrophobic Hydrophobic 0.41 View
C-H C-H F490 Y53 F490 Y53 Hydrophobic Hydrophobic 1.61 View
C-H C-H N450 S31 N450 S31 Hydrogen Bonds Hydrogen Bonds 0.77 View
C-H C-H N450 Y32 N450 Y32 Hydrogen Bonds Hydrogen Bonds 0.5 View
C-H C-H K444 P95 K444 P95 Hydrophobic Hydrophobic 0.27 View
C-H C-H K444 P95 K444 P95 Hydrophobic Hydrophobic 0.52 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6G | 7M6G_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6G_uk_mut C-H G446 W50 Hydrogen Bonds 3.66 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 4.30 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.91 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.95 View
7M6G_uk_mut C-H Y449 Y53 Aromatic Stacking 3.66 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.92 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.32 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.11 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.37 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.58 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 4.00 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 4.18 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 4.06 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.74 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 2.95 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 2.94 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.14 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.10 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.29 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 4.43 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.72 View
7M6G_uk_mut C-H Y449 Y53 Hydrophobic 3.76 View
7M6G_uk_mut C-H Y449 Y53 Hydrogen Bonds 3.07 View
7M6G_uk_mut C-H N450 S31 Hydrogen Bonds 3.53 View
7M6G_uk_mut C-H F490 Y53 Hydrophobic 4.20 View
7M6G_uk_mut C-H F490 Y53 Hydrophobic 3.89 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph