VTR

1 main matches found (1 matches in total )

Execution time: 13.0 seconds

Match RMSD = 0.71

VTR = 0.15

Average AVD = 0.71 Å

Parameters

Chains(7M6F.pdb ): E versus D

Chains(7M6F_uk_mut.pdb ) E versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6F 3426 0 0 1 0 0 0 1
B7M6F_uk_mut 3426 2 3 8 0 2 0 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-E D-E A29 G502 A29 G502 Hydrogen Bonds Hydrogen Bonds 0.71 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6F | 7M6F_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6F_uk_mut D-E A29 Y501 Hydrogen Bonds 2.56 View
7M6F_uk_mut D-E G30 Y501 Hydrogen Bonds 3.47 View
7M6F_uk_mut D-E Y91 D405 Hydrophobic 4.46 View
7M6F_uk_mut D-E R94 R403 Repulsive 5.81 View
7M6F_uk_mut D-E R94 R403 Repulsive 5.84 View
7M6F_uk_mut D-E R94 G404 Hydrogen Bonds 3.06 View
7M6F_uk_mut D-E R94 G404 Hydrogen Bonds 3.81 View
7M6F_uk_mut D-E R94 D405 Hydrophobic 3.57 View
7M6F_uk_mut D-E R94 D405 Attractive, Hydrogen Bonds 4.61 View
7M6F_uk_mut D-E R94 D405 Attractive 5.92 View
7M6F_uk_mut D-E R94 D405 Attractive 5.97 View
7M6F_uk_mut D-E R94 V503 Hydrogen Bonds 3.42 View
7M6F_uk_mut D-E R94 G504 Hydrogen Bonds 3.89 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph