VTR

25 main matches found (57 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.58

VTR = 0.01

Average AVD = 0.49 Å

Parameters

Chains(7M6D.pdb ): C versus H

Chains(7M6D_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6D 1050 32 3 24 0 0 0 59
B7M6D_uk_mut 1050 41 3 24 0 0 1 69

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.58 View
C-H C-H K417 Y52 K417 Y52 Hydrophobic Hydrophobic 0.56 View
C-H C-H T415 T56 T415 T56 Hydrophobic Hydrophobic 0.21 View
C-H C-H K417 E97 K417 E97 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.41 View
C-H C-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.27 View
C-H C-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.64 View
C-H C-H F456 L96 F456 L96 Hydrophobic Hydrophobic 0.53 View
C-H C-H F456 V99 F456 V99 Hydrophobic Hydrophobic 0.97 View
C-H C-H L455 V99 L455 V99 Hydrophobic Hydrophobic 0.94 View
C-H C-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 0.98 View
C-H C-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-H C-H Y473 R31 Y473 R31 Hydrophobic Hydrophobic 0.22 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.21 View
C-H C-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.23 View
C-H C-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 1.06 View
C-H C-H Q474 R31 Q474 R31 Hydrogen Bonds Hydrogen Bonds 0.27 View
C-H C-H Y473 R31 Y473 R31 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-H C-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.37 View
C-H C-H N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-H C-H R403 E97 R403 E97 Attractive Attractive 0.62 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.22 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.21 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.29 View
C-H C-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.71 View
C-H C-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.24 View
C-H C-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.22 View
C-H C-H Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.3 View
C-H C-H A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.2 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.27 View
C-H C-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-H C-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-H C-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.26 View
C-H C-H L455 E97 L455 E97 Hydrophobic Hydrophobic 0.35 View
C-H C-H L455 V98 L455 V98 Hydrophobic Hydrophobic 1.2 View
C-H C-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.47 View
C-H C-H Q493 V98 Q493 V98 Hydrophobic Hydrophobic 0.95 View
C-H C-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 1.08 View
C-H C-H Q493 V99 Q493 V98 Hydrophobic Hydrophobic 1.67 View
C-H C-H Q493 V98 Q493 V98 Hydrophobic Hydrophobic 1.03 View
C-H C-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.4 View
C-H C-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.36 View
C-H C-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.38 View
C-H C-H K417 E97 K417 E97 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.45 View
C-H C-H L455 E97 L455 E97 Hydrophobic Hydrophobic 0.32 View
C-H C-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.21 View
C-H C-H K417 Y33 K417 Y33 Hydrophobic Hydrophobic 0.34 View
C-H C-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.87 View
C-H C-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.35 View
C-H C-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-H C-H N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-H C-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.16 View
C-H C-H D420 T56 D420 T56 Hydrogen Bonds Hydrogen Bonds 0.45 View
C-H C-H G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-H C-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.37 View
C-H C-H F456 V99 F456 V99 Hydrophobic Hydrophobic 0.86 View
C-H C-H Y453 E97 Y453 E97 Hydrogen Bonds Hydrogen Bonds 0.63 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6D | 7M6D_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6D_uk_mut C-H K417 Y52 Hydrophobic 4.42 View
7M6D_uk_mut C-H Y421 Y52 Hydrophobic 4.01 View
7M6D_uk_mut C-H F456 Y33 Aromatic Stacking 5.97 View
7M6D_uk_mut C-H Y473 R31 Hydrophobic 4.47 View
7M6D_uk_mut C-H Y489 V99 Hydrophobic 4.39 View
7M6D_uk_mut C-H Y489 V99 Hydrophobic 4.39 View
7M6D_uk_mut C-H Y489 V99 Hydrophobic 3.58 View
7M6D_uk_mut C-H Y489 V99 Hydrophobic 4.23 View
7M6D_uk_mut C-H Y489 V99 Hydrophobic 3.06 View
7M6D_uk_mut C-H Y489 V99 Hydrophobic 4.33 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph