VTR

24 main matches found (36 matches in total )

Execution time: 13.0 seconds

Match RMSD = 0.84

VTR = 0.02

Average AVD = 0.7 Å

Parameters

Chains(7LY3.pdb ): A versus C

Chains(7LY3_uk_mut.pdb ) A versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LY3 1429 13 4 17 0 8 1 43
B7LY3_uk_mut 1423 13 4 20 0 8 0 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-C A-C R246 H30 R246 H30 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.37 View
A-C A-C F140 I93 F140 I93 Hydrophobic Hydrophobic 0.73 View
A-C A-C R246 H30 R246 H30 Repulsive Repulsive 0.4 View
A-C A-C R158 I93 R158 I93 Hydrophobic Hydrophobic 1.54 View
A-C A-C R246 D91 R246 D91 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-C A-C K147 K29 K147 K29 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-C A-C E156 I93 E156 I93 Hydrophobic Hydrophobic 1.22 View
A-C A-C K147 D50 K147 D50 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.93 View
A-C A-C R246 H30 R246 H30 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.41 View
A-C A-C R246 S92 R246 S92 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-C A-C R246 D91 R246 D91 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-C A-C R246 H30 R246 H30 Repulsive Repulsive 0.37 View
A-C A-C R246 H30 R246 H30 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.43 View
A-C A-C R158 I93 R158 I93 Hydrophobic Hydrophobic 0.76 View
A-C A-C K147 D50 K147 S65 Attractive Hydrogen Bonds Hydrogen Bonds 1.85 View
A-C A-C L249 I93 L249 I93 Hydrophobic Hydrophobic 1.17 View
A-C A-C Y144 K29 H146 K29 Hydrophobic Hydrophobic 1.79 View
A-C A-C R246 H30 R246 H30 Repulsive Repulsive 0.33 View
A-C A-C K147 H30 K147 H30 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-C A-C E156 I93 E156 I93 Hydrophobic Hydrophobic 0.49 View
A-C A-C K147 L27 K147 L27 Hydrogen Bonds Hydrogen Bonds 0.7 View
A-C A-C N148 A28 N148 A28 Hydrogen Bonds Hydrogen Bonds 0.93 View
A-C A-C L249 I93 L249 I93 Hydrophobic Hydrophobic 0.69 View
A-C A-C R246 H30 R246 H30 Repulsive Repulsive Hydrogen Bonds 0.39 View
A-C A-C H146 A28 H146 A28 Hydrogen Bonds Hydrogen Bonds 0.86 View
A-C A-C R246 D91 R246 D91 Attractive Attractive 0.21 View
A-C A-C Y144 K29 H146 K29 Hydrophobic Hydrophobic 1.81 View
A-C A-C N148 G67 N148 G67 Hydrogen Bonds Hydrogen Bonds 0.75 View
A-C A-C R246 A90 R246 A90 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-C A-C R246 D91 R246 D91 Attractive Attractive 0.19 View
A-C A-C H146 A28 H146 A28 Hydrogen Bonds Hydrogen Bonds 0.87 View
A-C A-C R246 H30 R246 H30 Repulsive Repulsive 0.36 View
A-C A-C F140 I93 F140 I93 Hydrophobic Hydrophobic 0.76 View
A-C A-C K147 Y31 K147 Y31 Hydrophobic Hydrophobic 0.28 View
A-C A-C N148 A28 N148 A28 Hydrogen Bonds Hydrogen Bonds 0.98 View
A-C A-C P251 W97 P251 W97 Hydrophobic Hydrophobic 0.24 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LY3 | 7LY3_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LY3 A-C Y144 K29 Hydrophobic 4.46 View
7LY3 A-C Y144 H30 Aromatic Stacking 4.92 View
7LY3_uk_mut A-C H146 K29 Hydrogen Bonds 3.80 View
7LY3_uk_mut A-C K147 D50 Attractive, Hydrogen Bonds 4.68 View
7LY3_uk_mut A-C L249 I93 Hydrophobic 4.17 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph