VTR

3 main matches found (4 matches in total )

Execution time: 22.0 seconds

Match RMSD = 1.51

VTR = 0.2

Average AVD = 1.48 Å

Parameters

Chains(7LY2.pdb ): B versus G

Chains(7LY2_uk_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LY2 4470 2 0 5 0 0 0 7
B7LY2_uk_mut 4467 8 0 6 0 0 0 14

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G P251 Y53 P251 Y53 Hydrogen Bonds Hydrogen Bonds 1.29 View
B-G B-G P251 G33 P251 G33 Hydrogen Bonds Hydrogen Bonds 1.13 View
B-G B-G P251 A99 P251 A99 Hydrophobic Hydrophobic 1.57 View
B-G B-G D253 S31 D253 S31 Hydrogen Bonds Hydrogen Bonds 1.94 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LY2 | 7LY2_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LY2 B-G N17 S56 Hydrogen Bonds 3.06 View
7LY2 B-G D253 Y53 Hydrophobic 4.38 View
7LY2 B-G S254 G102 Hydrogen Bonds 3.71 View
7LY2_uk_mut B-G N17 S56 Hydrogen Bonds 3.67 View
7LY2_uk_mut B-G N17 S56 Hydrogen Bonds 3.80 View
7LY2_uk_mut B-G K77 W52 Hydrophobic 4.12 View
7LY2_uk_mut B-G K77 W52 Hydrophobic 3.07 View
7LY2_uk_mut B-G K77 W52 Hydrophobic 3.97 View
7LY2_uk_mut B-G T250 G102 Hydrogen Bonds 3.79 View
7LY2_uk_mut B-G P251 Y32 Hydrophobic 3.90 View
7LY2_uk_mut B-G P251 Y32 Hydrophobic 4.24 View
7LY2_uk_mut B-G P251 Y32 Hydrophobic 3.32 View
7LY2_uk_mut B-G P251 W52 Hydrophobic 4.42 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph