VTR

2 main matches found (3 matches in total )

Execution time: 20.0 seconds

Match RMSD = 1.24

VTR = 0.2

Average AVD = 1.14 Å

Parameters

Chains(7LY2.pdb ): A versus L

Chains(7LY2_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LY2 4470 1 0 2 0 0 0 3
B7LY2_uk_mut 4467 3 3 15 0 12 0 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L Y144 K29 H146 K29 Hydrophobic Hydrophobic 1.81 View
A-L A-L K147 K29 K147 K29 Hydrogen Bonds Hydrogen Bonds 0.72 View
A-L A-L N148 A28 N148 A28 Hydrogen Bonds Hydrogen Bonds 0.91 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LY2 | 7LY2_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LY2_uk_mut A-L H146 A28 Hydrogen Bonds 3.73 View
7LY2_uk_mut A-L K147 D50 Attractive 5.75 View
7LY2_uk_mut A-L K147 D50 Attractive, Hydrogen Bonds 4.22 View
7LY2_uk_mut A-L S155 S92 Hydrogen Bonds 3.79 View
7LY2_uk_mut A-L E156 D91 Repulsive 5.52 View
7LY2_uk_mut A-L R246 K29 Repulsive 5.64 View
7LY2_uk_mut A-L R246 K29 Repulsive 5.13 View
7LY2_uk_mut A-L R246 K29 Repulsive 5.87 View
7LY2_uk_mut A-L R246 H30 Repulsive, Hydrogen Bonds 3.32 View
7LY2_uk_mut A-L R246 H30 Repulsive, Hydrogen Bonds 4.48 View
7LY2_uk_mut A-L R246 H30 Repulsive 2.92 View
7LY2_uk_mut A-L R246 H30 Repulsive 4.39 View
7LY2_uk_mut A-L R246 H30 Repulsive, Hydrogen Bonds 2.90 View
7LY2_uk_mut A-L R246 H30 Repulsive, Hydrogen Bonds 4.86 View
7LY2_uk_mut A-L R246 H30 Repulsive, Hydrogen Bonds 3.40 View
7LY2_uk_mut A-L R246 H30 Repulsive, Hydrogen Bonds 4.43 View
7LY2_uk_mut A-L R246 A90 Hydrogen Bonds 3.16 View
7LY2_uk_mut A-L R246 D91 Hydrogen Bonds 3.06 View
7LY2_uk_mut A-L R246 D91 Attractive 5.25 View
7LY2_uk_mut A-L R246 D91 Hydrogen Bonds 2.65 View
7LY2_uk_mut A-L R246 S92 Hydrogen Bonds 3.64 View
7LY2_uk_mut A-L L249 I93 Hydrophobic 4.47 View
7LY2_uk_mut A-L L249 I93 Hydrophobic 4.03 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph