VTR

5 main matches found (37 matches in total )

Execution time: 28.0 seconds

Match RMSD = 0.42

VTR = 0.0

Average AVD = 0.4 Å

Parameters

Chains(7LY2.pdb ): A versus F

Chains(7LY2_uk_mut.pdb ) A versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LY2 4470 32 0 2 0 0 3 37
B7LY2_uk_mut 4467 33 0 3 0 0 3 39

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.48 View
A-F A-F V367 F105 V367 F105 Hydrophobic Hydrophobic 0.52 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.46 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.5 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.22 View
A-F A-F A372 Y103 A372 Y103 Hydrophobic Hydrophobic 0.27 View
A-F A-F F374 W106 F374 W106 Hydrophobic Hydrophobic 0.3 View
A-F A-F L368 F105 L368 F105 Hydrophobic Hydrophobic 0.51 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.48 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.36 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.22 View
A-F A-F S373 F105 S373 F105 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.5 View
A-F A-F A372 Y103 A372 Y103 Hydrophobic Hydrophobic 0.34 View
A-F A-F F342 F105 F342 F105 Hydrophobic Hydrophobic 0.35 View
A-F A-F F342 W106 F342 W106 Hydrogen Bonds Hydrogen Bonds 1.01 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.24 View
A-F A-F F374 W106 F374 W106 Hydrophobic Hydrophobic 0.28 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.3 View
A-F A-F F342 F105 F342 F105 Hydrophobic Hydrophobic 0.37 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.36 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.43 View
A-F A-F F342 F105 F342 F105 Hydrophobic Hydrophobic 0.41 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.44 View
A-F A-F F374 F105 F374 F105 Aromatic Stacking Aromatic Stacking 0.37 View
A-F A-F F374 W106 F374 W106 Hydrophobic Hydrophobic 0.54 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.32 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.25 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.47 View
A-F A-F F374 W106 F374 W106 Hydrophobic Hydrophobic 0.3 View
A-F A-F W436 W106 W436 W106 Hydrophobic Hydrophobic 0.24 View
A-F A-F F342 F105 F342 F105 Aromatic Stacking Aromatic Stacking 0.36 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.48 View
A-F A-F W436 W106 W436 W106 Aromatic Stacking Aromatic Stacking 0.44 View
A-F A-F L368 F105 L368 F105 Hydrophobic Hydrophobic 0.47 View
A-F A-F F342 F105 F342 F105 Hydrophobic Hydrophobic 0.39 View
A-F A-F F374 F105 F374 F105 Hydrophobic Hydrophobic 0.41 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LY2 | 7LY2_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LY2_uk_mut A-F S373 D104 Hydrogen Bonds 3.35 View
7LY2_uk_mut A-F F374 F105 Hydrophobic 4.46 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph