VTR

5 main matches found (19 matches in total )

Execution time: 21.0 seconds

Match RMSD = 0.44

VTR = 0.01

Average AVD = 0.41 Å

Parameters

Chains(7LSS.pdb ): B versus L

Chains(7LSS_uk_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LSS 2774 14 0 5 0 0 0 19
B7LSS_uk_mut 2774 14 0 8 0 0 0 22

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-L B-L T500 T93 T500 T93 Hydrogen Bonds Hydrogen Bonds 0.23 View
B-L B-L V445 Y91 V445 Y91 Hydrophobic Hydrophobic 0.43 View
B-L B-L P499 Y32 P499 Y32 Hydrophobic Hydrophobic 0.17 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.5 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.33 View
B-L B-L N440 Y32 N440 Y32 Hydrogen Bonds Hydrogen Bonds 0.51 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.52 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.32 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.48 View
B-L B-L T500 Y91 T500 Y91 Hydrophobic Hydrophobic 0.39 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.59 View
B-L B-L Q498 T93 Q498 T93 Hydrophobic Hydrophobic 0.4 View
B-L B-L N439 Y32 N439 Y32 Hydrogen Bonds Hydrogen Bonds 0.31 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.66 View
B-L B-L N439 Y32 N439 Y32 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-L B-L T500 T93 T500 T93 Hydrogen Bonds Hydrogen Bonds 0.33 View
B-L B-L V445 Y91 V445 Y91 Hydrophobic Hydrophobic 0.46 View
B-L B-L P499 Y32 P499 Y32 Hydrophobic Hydrophobic 0.21 View
B-L B-L P499 Y91 P499 Y91 Hydrophobic Hydrophobic 0.78 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LSS | 7LSS_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LSS_uk_mut B-L N440 Y32 Hydrogen Bonds 3.88 View
7LSS_uk_mut B-L Q498 T93 Hydrogen Bonds 3.59 View
7LSS_uk_mut B-L Q498 T93 Hydrogen Bonds 3.57 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph