VTR

10 main matches found (30 matches in total )

Execution time: 24.0 seconds

Match RMSD = 0.55

VTR = 0.01

Average AVD = 0.53 Å

Parameters

Chains(7LSS.pdb ): B versus H

Chains(7LSS_uk_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LSS 2774 20 4 8 0 1 0 33
B7LSS_uk_mut 2774 25 4 8 0 1 0 38

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H P499 I97 P499 I97 Hydrophobic Hydrophobic 0.59 View
B-H B-H G446 R58 G446 R58 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.4 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.56 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.5 View
B-H B-H V445 R58 V445 R58 Hydrophobic Hydrophobic 0.49 View
B-H B-H K444 D56 K444 D56 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.72 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.5 View
B-H B-H V445 L50 V445 L50 Hydrophobic Hydrophobic 0.71 View
B-H B-H V445 L50 V445 L50 Hydrophobic Hydrophobic 0.68 View
B-H B-H N440 E98 N440 E98 Hydrophobic Hydrophobic 0.56 View
B-H B-H K444 R58 K444 R58 Repulsive Repulsive 0.46 View
B-H B-H V445 L50 V445 L50 Hydrophobic Hydrophobic 0.76 View
B-H B-H N450 D54 N450 D54 Hydrogen Bonds Hydrogen Bonds 0.67 View
B-H B-H P499 I97 P499 I97 Hydrophobic Hydrophobic 0.4 View
B-H B-H K444 D54 K444 D54 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.79 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.52 View
B-H B-H V445 Y52 V445 Y52 Hydrogen Bonds Hydrogen Bonds 0.2 View
B-H B-H V445 Y52 V445 Y52 Hydrophobic Hydrophobic 0.47 View
B-H B-H K444 D54 K444 D54 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.85 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.43 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.35 View
B-H B-H G447 R58 G447 R58 Hydrogen Bonds Hydrogen Bonds 0.17 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.46 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.46 View
B-H B-H V445 R58 V445 R58 Hydrophobic Hydrophobic 0.49 View
B-H B-H K444 Y52 K444 Y52 Hydrophobic Hydrophobic 0.41 View
B-H B-H G446 R58 G446 R58 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-H B-H P499 I97 P499 I97 Hydrophobic Hydrophobic 0.57 View
B-H B-H K444 D56 K444 D56 Attractive Attractive 0.71 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LSS | 7LSS_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LSS_uk_mut B-H N440 E98 Hydrophobic 4.38 View
7LSS_uk_mut B-H V445 W47 Hydrophobic 4.38 View
7LSS_uk_mut B-H V445 W47 Hydrophobic 4.46 View
7LSS_uk_mut B-H V445 L50 Hydrophobic 4.43 View
7LSS_uk_mut B-H P499 I97 Hydrophobic 4.36 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph