VTR

6 main matches found (11 matches in total )

Execution time: 27.0 seconds

Match RMSD = 0.71

VTR = 0.06

Average AVD = 0.66 Å

Parameters

Chains(7LS9.pdb ): A versus H

Chains(7LS9_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LS9 3948 8 0 6 0 0 0 14
B7LS9_uk_mut 3939 13 0 6 0 0 0 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H V445 H96 V445 H96 Hydrogen Bonds Hydrogen Bonds 0.94 View
A-H A-H K444 W98 K444 W98 Hydrophobic Hydrophobic 0.27 View
A-H A-H G446 H96 G446 H96 Hydrogen Bonds Hydrogen Bonds 0.84 View
A-H A-H K444 W98 K444 W98 Hydrophobic Hydrophobic 0.35 View
A-H A-H N450 W98 N450 W98 Hydrogen Bonds Hydrogen Bonds 0.92 View
A-H A-H G447 H96 G447 H96 Hydrogen Bonds Hydrogen Bonds 0.86 View
A-H A-H G447 H96 G447 H96 Hydrogen Bonds Hydrogen Bonds 0.93 View
A-H A-H K444 W98 K444 W98 Hydrophobic Hydrophobic 0.4 View
A-H A-H K444 W98 K444 W98 Hydrophobic Hydrophobic 0.41 View
A-H A-H K444 W98 K444 W98 Hydrophobic Hydrophobic 0.46 View
A-H A-H Y449 W98 Y449 W98 Hydrogen Bonds Hydrogen Bonds 0.9 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LS9 | 7LS9_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LS9 A-H N450 Y100 Hydrophobic 4.27 View
7LS9 A-H L452 Y100 Hydrophobic 4.30 View
7LS9 A-H L452 Y100 Hydrophobic 4.36 View
7LS9_uk_mut A-H K444 W98 Hydrophobic 4.45 View
7LS9_uk_mut A-H K444 W98 Hydrophobic 4.46 View
7LS9_uk_mut A-H K444 W98 Hydrophobic 4.23 View
7LS9_uk_mut A-H K444 W98 Hydrophobic 4.33 View
7LS9_uk_mut A-H Y449 A99 Hydrophobic 4.37 View
7LS9_uk_mut A-H Y449 A99 Hydrophobic 3.79 View
7LS9_uk_mut A-H Y449 A99 Hydrophobic 2.92 View
7LS9_uk_mut A-H Y449 A99 Hydrophobic 3.15 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph