VTR

1 main matches found (2 matches in total )

Execution time: 20.0 seconds

Match RMSD = 1.2

VTR = 0.21

Average AVD = 1.16 Å

Parameters

Chains(7LQW.pdb ): C versus H

Chains(7LQW_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LQW 3362 1 0 1 0 0 0 2
B7LQW_uk_mut 3357 30 2 4 0 0 0 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-C H-C I53 K77 I53 K77 Hydrogen Bonds Hydrogen Bonds 1.45 View
H-C H-C F54 L18 F54 L18 Hydrophobic Hydrophobic 0.88 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LQW | 7LQW_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LQW_uk_mut H-C I52 V16 Hydrophobic 4.33 View
7LQW_uk_mut H-C I52 V16 Hydrophobic 4.42 View
7LQW_uk_mut H-C I52 V16 Hydrophobic 4.30 View
7LQW_uk_mut H-C I52 V16 Hydrophobic 3.97 View
7LQW_uk_mut H-C I52 V16 Hydrophobic 3.32 View
7LQW_uk_mut H-C I52 V16 Hydrophobic 3.88 View
7LQW_uk_mut H-C I52 L18 Hydrophobic 4.13 View
7LQW_uk_mut H-C I53 T76 Hydrogen Bonds 2.56 View
7LQW_uk_mut H-C I53 L244 Hydrophobic 3.96 View
7LQW_uk_mut H-C I53 L244 Hydrophobic 3.79 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 4.09 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 2.98 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 3.97 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 4.39 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 3.68 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 4.17 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 4.39 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 4.29 View
7LQW_uk_mut H-C F54 L18 Hydrophobic 4.26 View
7LQW_uk_mut H-C F54 T20 Hydrophobic 3.60 View
7LQW_uk_mut H-C F54 T20 Hydrophobic 4.25 View
7LQW_uk_mut H-C F54 R21 Hydrophobic 4.41 View
7LQW_uk_mut H-C F54 R21 Hydrophobic 4.05 View
7LQW_uk_mut H-C F54 R78 Hydrophobic 4.08 View
7LQW_uk_mut H-C F54 R78 Hydrophobic 3.50 View
7LQW_uk_mut H-C F54 R78 Hydrophobic 4.49 View
7LQW_uk_mut H-C F54 R78 Hydrophobic 4.29 View
7LQW_uk_mut H-C F54 F79 Hydrophobic 4.37 View
7LQW_uk_mut H-C T56 V16 Hydrophobic 4.42 View
7LQW_uk_mut H-C T56 N17 Hydrogen Bonds 2.64 View
7LQW_uk_mut H-C R99 Q14 Hydrogen Bonds 3.87 View
7LQW_uk_mut H-C R99 E154 Hydrophobic 4.47 View
7LQW_uk_mut H-C R99 E154 Attractive 5.72 View
7LQW_uk_mut H-C R99 E154 Attractive 5.57 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph