VTR

8 main matches found (14 matches in total )

Execution time: 24.0 seconds

Match RMSD = 0.9

VTR = 0.02

Average AVD = 0.82 Å

Parameters

Chains(7LQV.pdb ): A versus L

Chains(7LQV_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LQV 3941 6 1 6 0 0 1 14
B7LQV_uk_mut 3932 9 1 6 0 0 1 17

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L N148 K53 N148 K53 Hydrogen Bonds Hydrogen Bonds 1.02 View
A-L A-L N149 Y32 N149 Y32 Hydrogen Bonds Hydrogen Bonds 1.97 View
A-L A-L K147 D51 K147 D51 Hydrophobic Hydrophobic 0.88 View
A-L A-L K147 Q50 K147 Q50 Hydrogen Bonds Hydrogen Bonds 0.9 View
A-L A-L K147 Q50 K147 Q50 Hydrophobic Hydrophobic 0.7 View
A-L A-L K147 Q50 K147 Q50 Hydrophobic Hydrophobic 0.73 View
A-L A-L L249 S56 L249 S56 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-L A-L N149 Y32 N149 Y32 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.62 View
A-L A-L K147 D51 K147 D51 Attractive Attractive 0.87 View
A-L A-L K147 D51 K147 D51 Hydrophobic Hydrophobic 1.02 View
A-L A-L L249 S56 L249 S56 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.69 View
A-L A-L H146 Y32 H146 Y32 Aromatic Stacking Aromatic Stacking 0.6 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LQV | 7LQV_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LQV_uk_mut A-L K147 Q50 Hydrophobic 4.41 View
7LQV_uk_mut A-L K147 Q50 Hydrophobic 4.33 View
7LQV_uk_mut A-L K147 Q50 Hydrophobic 4.12 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph