VTR

4 main matches found (9 matches in total )

Execution time: 9.0 seconds

Match RMSD = 1.15

VTR = 0.09

Average AVD = 1.1 Å

Parameters

Chains(7LOP.pdb ): Z versus V

Chains(7LOP_uk_mut.pdb ) Z versus V

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LOP 2097 8 2 3 0 0 0 13
B7LOP_uk_mut 2097 12 2 4 0 0 0 18

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
V-Z V-Z W50 L390 W50 L390 Hydrophobic Hydrophobic 0.95 View
V-Z V-Z W50 L390 W50 L390 Hydrophobic Hydrophobic 1.11 View
V-Z V-Z Y32 G381 Y32 G381 Hydrogen Bonds Hydrogen Bonds 1.31 View
V-Z V-Z W50 L390 W50 L390 Hydrophobic Hydrophobic 1.48 View
V-Z V-Z W50 L390 W50 L390 Hydrophobic Hydrophobic 1.09 View
V-Z V-Z Y49 K386 Y49 K386 Hydrogen Bonds Hydrogen Bonds 0.75 View
V-Z V-Z W50 L390 W50 L390 Hydrophobic Hydrophobic 1.64 View
V-Z V-Z E55 K386 E55 K386 Attractive Attractive Hydrogen Bonds 1.0 View
V-Z V-Z E55 K386 E55 K386 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.61 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LOP | 7LOP_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LOP V-Z I28 F392 Hydrophobic 3.87 View
7LOP V-Z I28 L517 Hydrophobic 4.25 View
7LOP V-Z I28 L517 Hydrophobic 4.27 View
7LOP_uk_mut V-Z K30 L517 Hydrophobic 3.82 View
7LOP_uk_mut V-Z W50 L390 Hydrophobic 4.45 View
7LOP_uk_mut V-Z W50 L390 Hydrophobic 3.97 View
7LOP_uk_mut V-Z W50 L390 Hydrophobic 4.49 View
7LOP_uk_mut V-Z W50 L390 Hydrophobic 3.64 View
7LOP_uk_mut V-Z W50 L390 Hydrophobic 4.00 View
7LOP_uk_mut V-Z W50 F392 Hydrophobic 4.10 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph