VTR

2 main matches found (9 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.65

VTR = 0.02

Average AVD = 0.64 Å

Parameters

Chains(7LOP.pdb ): A versus W

Chains(7LOP_uk_mut.pdb ) A versus W

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LOP 2097 7 0 2 0 0 0 9
B7LOP_uk_mut 2097 7 0 4 0 0 0 11

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
W-A W-A Y27 T500 Y27 T500 Hydrophobic Hydrophobic 0.62 View
W-A W-A N76 T500 N76 T500 Hydrogen Bonds Hydrogen Bonds 0.85 View
W-A W-A Y27 V445 Y27 V445 Hydrophobic Hydrophobic 0.5 View
W-A W-A Y27 T500 Y27 T500 Hydrophobic Hydrophobic 0.54 View
W-A W-A Y27 T500 Y27 T500 Hydrophobic Hydrophobic 0.49 View
W-A W-A S74 V503 S74 V503 Hydrogen Bonds Hydrogen Bonds 0.86 View
W-A W-A Y27 T500 Y27 T500 Hydrophobic Hydrophobic 0.65 View
W-A W-A Y27 T500 Y27 T500 Hydrophobic Hydrophobic 0.7 View
W-A W-A Y27 T500 Y27 T500 Hydrophobic Hydrophobic 0.52 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LOP | 7LOP_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LOP_uk_mut W-A K23 Y501 Hydrogen Bonds 3.39 View
7LOP_uk_mut W-A Y27 Q498 Hydrogen Bonds 3.64 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph