VTR

12 main matches found (42 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.65

VTR = 0.01

Average AVD = 0.59 Å

Parameters

Chains(7LOP.pdb ): A versus B

Chains(7LOP_uk_mut.pdb ) A versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LOP 2097 30 4 11 0 0 0 45
B7LOP_uk_mut 2097 34 4 13 0 0 0 51

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-A B-A T31 P384 T31 P384 Hydrophobic Hydrophobic 0.21 View
B-A B-A W33 K378 W33 K378 Hydrophobic Hydrophobic 0.38 View
B-A B-A I98 G381 I98 G381 Hydrogen Bonds Hydrogen Bonds 1.16 View
B-A B-A E56 K378 E56 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.66 View
B-A B-A W33 K378 W33 K378 Hydrophobic Hydrophobic 0.32 View
B-A B-A I30 F377 I30 F377 Hydrophobic Hydrophobic 0.52 View
B-A B-A S96 T385 S96 T385 Hydrogen Bonds Hydrogen Bonds 0.71 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.54 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 0.43 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 0.26 View
B-A B-A S96 T385 S96 T385 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.88 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 0.34 View
B-A B-A D54 K378 D54 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.83 View
B-A B-A W33 K378 W33 K378 Hydrophobic Hydrophobic 0.37 View
B-A B-A I30 F377 I30 F377 Hydrophobic Hydrophobic 0.25 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 0.16 View
B-A B-A I98 Y380 I98 Y380 Hydrophobic Hydrophobic 0.91 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.79 View
B-A B-A I98 Y380 I98 Y380 Hydrophobic Hydrophobic 1.05 View
B-A B-A T31 Y369 T31 Y369 Hydrophobic Hydrophobic 0.26 View
B-A B-A Y27 N370 Y27 N370 Hydrophobic Hydrophobic 0.55 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.53 View
B-A B-A I98 C379 I98 C379 Hydrogen Bonds Hydrogen Bonds 0.63 View
B-A B-A I98 Y380 I98 Y380 Hydrophobic Hydrophobic 0.95 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 0.4 View
B-A B-A I98 Y380 I98 Y380 Hydrophobic Hydrophobic 0.8 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 1.18 View
B-A B-A Y52 F377 Y52 F377 Hydrogen Bonds Hydrogen Bonds 0.52 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.67 View
B-A B-A E56 K378 E56 K378 Attractive Attractive 0.62 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.58 View
B-A B-A I30 F377 I30 F377 Hydrophobic Hydrophobic 0.35 View
B-A B-A I30 F377 I30 F377 Hydrophobic Hydrophobic 0.25 View
B-A B-A I30 F377 I30 F377 Hydrophobic Hydrophobic 0.3 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.6 View
B-A B-A Y52 F377 Y52 F377 Hydrogen Bonds Hydrogen Bonds 0.4 View
B-A B-A T31 F377 T31 F377 Hydrophobic Hydrophobic 0.59 View
B-A B-A Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.83 View
B-A B-A S96 S383 S96 S383 Hydrogen Bonds Hydrogen Bonds 1.04 View
B-A B-A D54 K378 D54 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.96 View
B-A B-A G28 Y369 G28 Y369 Hydrogen Bonds Hydrogen Bonds 0.61 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LOP | 7LOP_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LOP_uk_mut B-A Y32 T385 Hydrophobic 4.20 View
7LOP_uk_mut B-A W33 K378 Hydrophobic 3.98 View
7LOP_uk_mut B-A W33 C379 Hydrogen Bonds 3.83 View
7LOP_uk_mut B-A Y52 K378 Hydrophobic 4.29 View
7LOP_uk_mut B-A Y52 K378 Hydrophobic 4.26 View
7LOP_uk_mut B-A S96 S383 Hydrogen Bonds 3.39 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph