VTR

17 main matches found (24 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.79

VTR = 0.06

Average AVD = 0.73 Å

Parameters

Chains(7LM8.pdb ): A versus M

Chains(7LM8_uk_mut.pdb ) A versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LM8 1043 7 8 9 0 3 0 27
B7LM8_uk_mut 1043 10 12 17 0 3 0 42

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-M A-M R346 E54 R346 E54 Attractive Attractive 1.07 View
A-M A-M K444 D56 K444 D56 Attractive Attractive 0.67 View
A-M A-M T345 Y52 T345 Y52 Hydrophobic Hydrophobic 0.7 View
A-M A-M L441 V98 L441 V98 Hydrophobic Hydrophobic 1.56 View
A-M A-M K444 R58 K444 R58 Repulsive Repulsive 0.51 View
A-M A-M L441 V98 L441 V98 Hydrophobic Hydrophobic 1.02 View
A-M A-M K444 D56 K444 D56 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.53 View
A-M A-M L441 R58 L441 R58 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-M A-M L441 V98 L441 V98 Hydrophobic Hydrophobic 0.66 View
A-M A-M K444 R58 K444 R58 Hydrophobic Hydrophobic 0.35 View
A-M A-M N343 Y99 N343 Y99 Hydrophobic Hydrophobic 1.2 View
A-M A-M N450 D56 N450 D56 Hydrogen Bonds Hydrogen Bonds 0.67 View
A-M A-M K444 T57 K444 T57 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-M A-M N450 E54 N450 E54 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-M A-M R346 E54 R346 E54 Attractive Attractive 0.4 View
A-M A-M D442 R58 D442 R58 Attractive Attractive 0.58 View
A-M A-M R346 E54 R346 E54 Attractive Attractive 0.5 View
A-M A-M K444 R58 K444 R58 Repulsive Repulsive 0.52 View
A-M A-M L441 V98 L441 V98 Hydrophobic Hydrophobic 1.38 View
A-M A-M L441 R58 L441 R58 Hydrogen Bonds Hydrogen Bonds 0.77 View
A-M A-M R346 E54 R346 E54 Attractive Attractive 0.97 View
A-M A-M N450 S55 N450 S55 Hydrogen Bonds Hydrogen Bonds 0.79 View
A-M A-M D442 R58 D442 R58 Attractive Attractive 0.45 View
A-M A-M K444 R58 K444 R58 Repulsive Repulsive 0.44 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LM8 | 7LM8_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LM8 A-M N343 S100 Hydrogen Bonds 2.85 View
7LM8 A-M W436 S100 Hydrogen Bonds 2.90 View
7LM8_uk_mut A-M N343 Y99 Hydrophobic 3.58 View
7LM8_uk_mut A-M T345 R96 Hydrogen Bonds 3.41 View
7LM8_uk_mut A-M T345 G97 Hydrogen Bonds 3.89 View
7LM8_uk_mut A-M T345 V98 Hydrogen Bonds 3.58 View
7LM8_uk_mut A-M T345 V98 Hydrophobic 3.85 View
7LM8_uk_mut A-M R346 E54 Attractive, Hydrogen Bonds 2.82 View
7LM8_uk_mut A-M R346 E54 Attractive, Hydrogen Bonds 3.73 View
7LM8_uk_mut A-M R346 E54 Attractive, Hydrogen Bonds 3.08 View
7LM8_uk_mut A-M R346 E54 Attractive, Hydrogen Bonds 4.47 View
7LM8_uk_mut A-M L441 V98 Hydrophobic 4.12 View
7LM8_uk_mut A-M D442 R58 Hydrogen Bonds 3.63 View
7LM8_uk_mut A-M S443 R58 Hydrogen Bonds 3.46 View
7LM8_uk_mut A-M N448 D56 Hydrogen Bonds 3.79 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph