VTR

17 main matches found (30 matches in total )

Execution time: 11.0 seconds

Match RMSD = 1.15

VTR = 0.14

Average AVD = 1.05 Å

Parameters

Chains(7LM8.pdb ): A versus H

Chains(7LM8_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LM8 1043 19 4 14 0 0 0 37
B7LM8_uk_mut 1043 40 4 19 0 0 1 64

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.62 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.38 View
A-H A-H D427 R94 D427 R94 Attractive Attractive 0.95 View
A-H A-H Q414 Q101 Q414 Q101 Hydrogen Bonds Hydrogen Bonds 0.88 View
A-H A-H D427 R94 D427 R94 Attractive Attractive 0.54 View
A-H A-H D427 T28 D427 T28 Hydrogen Bonds Hydrogen Bonds 0.37 View
A-H A-H Q414 Q101 Q414 Q101 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.08 View
A-H A-H G413 Y32 G413 Y32 Hydrogen Bonds Hydrogen Bonds 0.76 View
A-H A-H D427 T28 D427 T28 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-H A-H Y380 Y99 Y380 Y100 Hydrophobic Hydrogen Bonds 1.94 View
A-H A-H D427 R94 D427 R94 Attractive Attractive 0.84 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 0.6 View
A-H A-H D427 R94 D427 R94 Attractive Attractive 0.81 View
A-H A-H D427 Y32 D427 Y32 Hydrogen Bonds Hydrogen Bonds 1.08 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 0.81 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.15 View
A-H A-H D427 Y32 D427 Y32 Hydrophobic Hydrophobic 0.82 View
A-H A-H D427 S31 D427 S31 Hydrogen Bonds Hydrogen Bonds 0.53 View
A-H A-H F429 R97 F429 R97 Hydrogen Bonds Hydrogen Bonds 1.42 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.92 View
A-H A-H P412 Y32 P412 Y32 Hydrogen Bonds Hydrogen Bonds 0.89 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.31 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.49 View
A-H A-H D428 S31 D428 S31 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.38 View
A-H A-H D427 R97 D427 R97 Hydrogen Bonds Hydrogen Bonds 1.07 View
A-H A-H Y380 R97 Y380 R97 Hydrophobic Hydrophobic 1.69 View
A-H A-H Y380 R97 Y380 R97 Hydrophobic Hydrophobic 1.79 View
A-H A-H F429 R97 F429 R97 Hydrogen Bonds Hydrogen Bonds 1.28 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LM8 | 7LM8_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LM8 A-H K378 Y99 Hydrophobic 3.73 View
7LM8 A-H K378 Y99 Hydrophobic 3.74 View
7LM8 A-H C379 Y100 Hydrogen Bonds 2.89 View
7LM8 A-H C379 Y100 Hydrogen Bonds 2.79 View
7LM8 A-H C379 Y100 Hydrophobic 4.49 View
7LM8 A-H Y380 Y99 Hydrophobic 4.00 View
7LM8 A-H Y380 Y99 Hydrophobic 3.78 View
7LM8_uk_mut A-H K378 Y99 Hydrophobic 4.48 View
7LM8_uk_mut A-H K378 Y99 Hydrophobic 4.14 View
7LM8_uk_mut A-H K378 Y99 Hydrophobic 4.23 View
7LM8_uk_mut A-H K378 Y99 Hydrophobic 3.77 View
7LM8_uk_mut A-H K378 Y100 Hydrophobic 4.45 View
7LM8_uk_mut A-H K378 Y100 Hydrophobic 3.20 View
7LM8_uk_mut A-H K378 Y100 Hydrophobic 3.64 View
7LM8_uk_mut A-H K378 Y100 Hydrophobic 4.20 View
7LM8_uk_mut A-H K378 Y100 Hydrophobic 3.49 View
7LM8_uk_mut A-H K378 Y100 Hydrogen Bonds 3.40 View
7LM8_uk_mut A-H C379 Y100 Hydrogen Bonds 2.52 View
7LM8_uk_mut A-H C379 Y100 Hydrogen Bonds 2.55 View
7LM8_uk_mut A-H Y380 R97 Hydrophobic 4.41 View
7LM8_uk_mut A-H Y380 R97 Hydrogen Bonds 3.76 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 4.07 View
7LM8_uk_mut A-H Y380 Y100 Aromatic Stacking 3.63 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.83 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.29 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.74 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.84 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 2.96 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 4.49 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 2.89 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 4.31 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.81 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 4.19 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.33 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.72 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 2.94 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 3.74 View
7LM8_uk_mut A-H Y380 Y100 Hydrophobic 2.94 View
7LM8_uk_mut A-H P412 R97 Hydrophobic 4.26 View
7LM8_uk_mut A-H G413 H102 Hydrogen Bonds 3.18 View
7LM8_uk_mut A-H D428 R97 Hydrogen Bonds 2.75 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph