VTR

10 main matches found (13 matches in total )

Execution time: 45.0 seconds

Match RMSD = 0.64

VTR = 0.06

Average AVD = 0.61 Å

Parameters

Chains(7LJR.pdb ): A versus T

Chains(7LJR_uk_mut.pdb ) A versus T

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LJR 3378 3 0 10 0 0 0 13
B7LJR_uk_mut 3375 13 0 12 0 0 1 26

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-T A-T V483 R115 V483 R115 Hydrophobic Hydrophobic 0.61 View
A-T A-T N487 S50 N487 S50 Hydrogen Bonds Hydrogen Bonds 1.08 View
A-T A-T N481 S113 N481 S113 Hydrogen Bonds Hydrogen Bonds 0.42 View
A-T A-T E484 S113 E484 S113 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-T A-T C488 S113 C488 S113 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-T A-T E484 S114 E484 S114 Hydrogen Bonds Hydrogen Bonds 0.42 View
A-T A-T F486 S113 F486 S113 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-T A-T F486 S112 F486 S112 Hydrogen Bonds Hydrogen Bonds 0.45 View
A-T A-T P479 S113 P479 S113 Hydrogen Bonds Hydrogen Bonds 0.45 View
A-T A-T F486 Y111 F486 Y111 Hydrophobic Hydrophobic 0.76 View
A-T A-T N487 S50 N487 S50 Hydrogen Bonds Hydrogen Bonds 0.89 View
A-T A-T E484 S112 E484 S112 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-T A-T V483 R115 V483 R115 Hydrophobic Hydrophobic 0.65 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LJR | 7LJR_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LJR_uk_mut A-T C480 S113 Hydrogen Bonds 3.84 View
7LJR_uk_mut A-T G485 Y111 Hydrogen Bonds 3.23 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 3.55 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 4.43 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 2.92 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 3.36 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 4.47 View
7LJR_uk_mut A-T F486 Y111 Aromatic Stacking 5.23 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 3.45 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 3.53 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 3.38 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 2.94 View
7LJR_uk_mut A-T F486 Y111 Hydrophobic 3.91 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph