VTR

12 main matches found (34 matches in total )

Execution time: 39.0 seconds

Match RMSD = 0.71

VTR = 0.05

Average AVD = 0.61 Å

Parameters

Chains(7LD1.pdb ): C versus M

Chains(7LD1_uk_mut.pdb ) C versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LD1 4251 22 0 10 0 0 2 34
B7LD1_uk_mut 4251 42 1 15 0 0 2 60

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-M C-M F377 Y128 F377 Y128 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-M C-M A411 W125 A411 W125 Hydrophobic Hydrophobic 0.76 View
C-M C-M R408 L131 R408 L131 Hydrogen Bonds Hydrogen Bonds 1.53 View
C-M C-M A372 N76 A372 N76 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-M C-M K378 W125 K378 W125 Hydrophobic Hydrophobic 1.01 View
C-M C-M R408 L131 R408 L131 Hydrophobic Hydrophobic 1.05 View
C-M C-M F377 Y128 F377 Y128 Aromatic Stacking Aromatic Stacking 0.36 View
C-M C-M Y369 Y128 Y369 Y128 Hydrophobic Hydrophobic 0.6 View
C-M C-M R408 L131 R408 L131 Hydrophobic Hydrophobic 1.02 View
C-M C-M T376 L131 T376 L131 Hydrophobic Hydrophobic 1.61 View
C-M C-M F374 N76 F374 N76 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-M C-M V503 I78 V503 I78 Hydrophobic Hydrophobic 0.53 View
C-M C-M F377 Y128 F377 Y128 Hydrophobic Hydrophobic 0.44 View
C-M C-M Y369 Y128 Y369 Y128 Hydrophobic Hydrophobic 0.4 View
C-M C-M F377 Y128 F377 Y128 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-M C-M Y369 Y128 Y369 Y128 Hydrophobic Hydrophobic 0.47 View
C-M C-M F377 Y128 F377 Y128 Hydrophobic Hydrophobic 0.28 View
C-M C-M C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.16 View
C-M C-M V503 I78 V503 I78 Hydrophobic Hydrophobic 0.98 View
C-M C-M K378 W125 K378 W125 Hydrophobic Hydrophobic 0.79 View
C-M C-M Y369 Y128 Y369 Y128 Aromatic Stacking Aromatic Stacking 0.35 View
C-M C-M V503 Q81 V503 Q81 Hydrophobic Hydrophobic 0.45 View
C-M C-M T376 L130 T376 L131 Hydrogen Bonds Hydrogen Bonds 1.24 View
C-M C-M F377 Y128 F377 Y128 Hydrophobic Hydrophobic 0.43 View
C-M C-M S371 N76 S371 N76 Hydrogen Bonds Hydrogen Bonds 0.29 View
C-M C-M F377 Y128 F377 Y128 Hydrophobic Hydrophobic 0.44 View
C-M C-M Y369 Y128 Y369 Y128 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-M C-M F377 Y128 F377 Y128 Hydrophobic Hydrophobic 0.29 View
C-M C-M A411 W125 A411 W125 Hydrophobic Hydrophobic 0.98 View
C-M C-M Y369 Y128 Y369 Y128 Hydrophobic Hydrophobic 0.58 View
C-M C-M C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.27 View
C-M C-M V503 I78 V503 I78 Hydrophobic Hydrophobic 0.53 View
C-M C-M Y369 Y128 Y369 Y128 Hydrophobic Hydrophobic 0.48 View
C-M C-M Y369 Y128 Y369 Y128 Hydrophobic Hydrophobic 0.64 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LD1 | 7LD1_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LD1_uk_mut C-M Y369 Y128 Hydrophobic 4.45 View
7LD1_uk_mut C-M Y369 Y128 Hydrogen Bonds 3.46 View
7LD1_uk_mut C-M T376 L131 Hydrophobic 4.46 View
7LD1_uk_mut C-M F377 Y128 Hydrophobic 4.35 View
7LD1_uk_mut C-M K378 D123 Attractive, Hydrogen Bonds 4.40 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 3.22 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 3.64 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 4.06 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 4.25 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 2.95 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 3.19 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 3.14 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 2.94 View
7LD1_uk_mut C-M K378 W125 Hydrophobic 3.91 View
7LD1_uk_mut C-M S383 S126 Hydrogen Bonds 3.23 View
7LD1_uk_mut C-M R408 L131 Hydrophobic 4.35 View
7LD1_uk_mut C-M R408 L131 Hydrophobic 4.21 View
7LD1_uk_mut C-M Y501 Q81 Hydrophobic 4.20 View
7LD1_uk_mut C-M Y501 Q81 Hydrophobic 4.17 View
7LD1_uk_mut C-M Y501 Q81 Hydrophobic 3.74 View
7LD1_uk_mut C-M Y501 Q81 Hydrophobic 3.69 View
7LD1_uk_mut C-M Y501 Q81 Hydrophobic 3.19 View
7LD1_uk_mut C-M Y501 Q81 Hydrophobic 4.42 View
7LD1_uk_mut C-M Y501 Q81 Hydrogen Bonds 2.57 View
7LD1_uk_mut C-M Y501 G82 Hydrogen Bonds 3.15 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph