VTR

11 main matches found (18 matches in total )

Execution time: 39.0 seconds

Match RMSD = 0.82

VTR = 0.1

Average AVD = 0.71 Å

Parameters

Chains(7LD1.pdb ): B versus H

Chains(7LD1_uk_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LD1 4251 7 0 11 0 0 0 18
B7LD1_uk_mut 4251 40 2 15 0 0 1 58

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.31 View
B-H B-H F374 N76 F374 N76 Hydrogen Bonds Hydrogen Bonds 0.57 View
B-H B-H N501 Q81 G502 Q81 Hydrogen Bonds Hydrogen Bonds 1.71 View
B-H B-H C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.13 View
B-H B-H S375 L130 S375 L130 Hydrogen Bonds Hydrogen Bonds 0.59 View
B-H B-H P499 Q81 P499 Q81 Hydrogen Bonds Hydrogen Bonds 0.62 View
B-H B-H V407 L131 V407 L131 Hydrophobic Hydrophobic 0.63 View
B-H B-H K378 Y128 K378 Y128 Hydrogen Bonds Hydrogen Bonds 0.54 View
B-H B-H K378 W125 K378 W125 Hydrophobic Hydrophobic 0.38 View
B-H B-H Y369 Y128 Y369 Y128 Hydrogen Bonds Hydrogen Bonds 0.97 View
B-H B-H C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.27 View
B-H B-H F377 Y128 F377 Y128 Hydrophobic Hydrophobic 1.16 View
B-H B-H F377 Y128 F377 Y128 Hydrophobic Hydrophobic 1.05 View
B-H B-H S375 L131 S375 L131 Hydrogen Bonds Hydrogen Bonds 0.59 View
B-H B-H A435 L131 Y508 L131 Hydrophobic Hydrophobic 1.14 View
B-H B-H F377 Y128 F377 Y128 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-H B-H F377 Y128 F377 Y128 Hydrophobic Hydrophobic 1.31 View
B-H B-H K378 W125 K378 W125 Hydrophobic Hydrophobic 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LD1 | 7LD1_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LD1_uk_mut B-H Y369 Y128 Aromatic Stacking 4.93 View
7LD1_uk_mut B-H Y369 Y128 Hydrophobic 3.72 View
7LD1_uk_mut B-H Y369 Y128 Hydrophobic 4.03 View
7LD1_uk_mut B-H Y369 Y128 Hydrophobic 4.49 View
7LD1_uk_mut B-H Y369 Y128 Hydrophobic 3.14 View
7LD1_uk_mut B-H Y369 Y128 Hydrophobic 4.46 View
7LD1_uk_mut B-H Y369 Y128 Hydrogen Bonds 2.63 View
7LD1_uk_mut B-H F374 Y128 Hydrophobic 3.68 View
7LD1_uk_mut B-H F374 Y128 Hydrophobic 4.17 View
7LD1_uk_mut B-H F374 Y128 Hydrophobic 3.58 View
7LD1_uk_mut B-H F374 Y128 Hydrophobic 4.15 View
7LD1_uk_mut B-H S375 L131 Hydrogen Bonds 3.54 View
7LD1_uk_mut B-H T376 Y128 Hydrogen Bonds 2.57 View
7LD1_uk_mut B-H T376 D129 Hydrogen Bonds 3.70 View
7LD1_uk_mut B-H T376 L131 Hydrophobic 4.38 View
7LD1_uk_mut B-H T376 L131 Hydrophobic 3.60 View
7LD1_uk_mut B-H F377 Y128 Hydrophobic 4.03 View
7LD1_uk_mut B-H F377 Y128 Hydrophobic 4.15 View
7LD1_uk_mut B-H F377 Y128 Hydrophobic 4.47 View
7LD1_uk_mut B-H F377 Y128 Hydrophobic 4.27 View
7LD1_uk_mut B-H F377 Y128 Hydrophobic 4.30 View
7LD1_uk_mut B-H K378 D123 Attractive 5.58 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.22 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.26 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.94 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.58 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.43 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.55 View
7LD1_uk_mut B-H K378 W125 Hydrophobic 3.80 View
7LD1_uk_mut B-H K378 D129 Attractive 5.82 View
7LD1_uk_mut B-H V407 L131 Hydrophobic 4.07 View
7LD1_uk_mut B-H V407 L131 Hydrophobic 4.06 View
7LD1_uk_mut B-H V407 L131 Hydrophobic 3.70 View
7LD1_uk_mut B-H V407 L131 Hydrophobic 3.23 View
7LD1_uk_mut B-H V407 L131 Hydrophobic 4.47 View
7LD1_uk_mut B-H A435 L131 Hydrophobic 3.47 View
7LD1_uk_mut B-H V503 I78 Hydrophobic 4.39 View
7LD1_uk_mut B-H V503 Q81 Hydrophobic 3.71 View
7LD1_uk_mut B-H Y508 L131 Hydrophobic 4.49 View
7LD1_uk_mut B-H Y508 L131 Hydrophobic 4.28 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph