VTR

3 main matches found (6 matches in total )

Execution time: 40.0 seconds

Match RMSD = 0.54

VTR = 0.1

Average AVD = 0.52 Å

Parameters

Chains(7LD1.pdb ): A versus O

Chains(7LD1_uk_mut.pdb ) A versus O

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LD1 4251 3 0 3 0 0 0 6
B7LD1_uk_mut 4251 10 4 13 0 0 0 27

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-O A-O D405 Y50 D405 Y50 Hydrogen Bonds Hydrogen Bonds 0.74 View
A-O A-O Y505 D20 Y505 D20 Hydrophobic Hydrophobic 0.38 View
A-O A-O Q409 Y50 Q409 Y50 Hydrogen Bonds Hydrogen Bonds 0.7 View
A-O A-O Y505 P120 Y505 P120 Hydrophobic Hydrophobic 0.33 View
A-O A-O D405 Y117 D405 Y117 Hydrophobic Hydrophobic 0.45 View
A-O A-O K417 S51 K417 S51 Hydrogen Bonds Hydrogen Bonds 0.49 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LD1 | 7LD1_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LD1_uk_mut A-O R403 D20 Attractive 5.87 View
7LD1_uk_mut A-O R403 D20 Attractive 5.36 View
7LD1_uk_mut A-O R403 D20 Attractive, Hydrogen Bonds 4.06 View
7LD1_uk_mut A-O R403 D20 Attractive 5.80 View
7LD1_uk_mut A-O D405 Y117 Hydrogen Bonds 2.58 View
7LD1_uk_mut A-O E406 Y50 Hydrogen Bonds 3.86 View
7LD1_uk_mut A-O R408 Y116 Hydrogen Bonds 3.62 View
7LD1_uk_mut A-O R408 Y116 Hydrogen Bonds 3.24 View
7LD1_uk_mut A-O R408 Y117 Hydrogen Bonds 3.03 View
7LD1_uk_mut A-O Q409 Y50 Hydrophobic 3.86 View
7LD1_uk_mut A-O Q409 Y50 Hydrogen Bonds 2.70 View
7LD1_uk_mut A-O Q409 S51 Hydrogen Bonds 3.76 View
7LD1_uk_mut A-O T415 S52 Hydrogen Bonds 3.41 View
7LD1_uk_mut A-O Y501 P120 Hydrophobic 4.34 View
7LD1_uk_mut A-O Y505 D20 Hydrophobic 3.71 View
7LD1_uk_mut A-O Y505 D20 Hydrophobic 3.61 View
7LD1_uk_mut A-O Y505 D20 Hydrophobic 3.81 View
7LD1_uk_mut A-O Y505 D20 Hydrophobic 3.68 View
7LD1_uk_mut A-O Y505 D20 Hydrophobic 3.88 View
7LD1_uk_mut A-O Y505 D20 Hydrogen Bonds 3.34 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph