VTR

11 main matches found (14 matches in total )

Execution time: 42.0 seconds

Match RMSD = 0.8

VTR = 0.04

Average AVD = 0.78 Å

Parameters

Chains(7LAB.pdb ): C versus L

Chains(7LAB_uk_mut.pdb ) C versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LAB 4194 6 0 10 0 0 1 17
B7LAB_uk_mut 4191 4 0 12 0 0 1 17

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-L C-L Q218 Y52 Q218 Y52 Hydrogen Bonds Hydrogen Bonds 0.85 View
C-L C-L Q218 Y52 Q218 Y52 Hydrogen Bonds Hydrogen Bonds 0.9 View
C-L C-L Q218 Y52 Q218 Y52 Hydrophobic Hydrophobic 0.74 View
C-L C-L L216 Y52 L216 Y52 Hydrogen Bonds Hydrogen Bonds 0.84 View
C-L C-L S605 S87 S605 S87 Hydrogen Bonds Hydrogen Bonds 0.36 View
C-L C-L Q218 S49 Q218 S49 Hydrogen Bonds Hydrogen Bonds 0.77 View
C-L C-L Q218 S51 Q218 S51 Hydrogen Bonds Hydrogen Bonds 1.07 View
C-L C-L Q218 S49 Q218 S49 Hydrogen Bonds Hydrogen Bonds 0.94 View
C-L C-L Q218 Y52 Q218 Y52 Hydrophobic Hydrophobic 0.8 View
C-L C-L N606 S87 N606 S87 Hydrogen Bonds Hydrogen Bonds 0.37 View
C-L C-L F32 Y52 F32 Y52 Hydrophobic Hydrophobic 0.87 View
C-L C-L Q218 S51 Q218 S51 Hydrogen Bonds Hydrogen Bonds 0.91 View
C-L C-L F32 Y52 F32 Y52 Aromatic Stacking Aromatic Stacking 0.61 View
C-L C-L Q218 S50 Q218 S50 Hydrogen Bonds Hydrogen Bonds 0.83 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LAB | 7LAB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LAB C-L N211 P115 Hydrophobic 4.45 View
7LAB C-L L212 Y111 Hydrophobic 4.43 View
7LAB C-L L212 W117 Hydrophobic 4.22 View
7LAB_uk_mut C-L Q218 S51 Hydrogen Bonds 3.73 View
7LAB_uk_mut C-L Q218 Y52 Hydrophobic 4.41 View
7LAB_uk_mut C-L N606 S87 Hydrogen Bonds 3.89 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph