VTR

45 main matches found (66 matches in total )

Execution time: 46.0 seconds

Match RMSD = 0.91

VTR = 0.06

Average AVD = 0.83 Å

Parameters

Chains(7LAB.pdb ): C versus H

Chains(7LAB_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LAB 4194 33 34 23 0 0 0 90
B7LAB_uk_mut 4191 26 35 28 0 0 0 89

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H R214 D71 R214 D71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.55 View
C-H C-H F32 Y131 F32 Y131 Hydrophobic Hydrophobic 0.74 View
C-H C-H R214 E73 R214 E73 Attractive Attractive 0.78 View
C-H C-H N30 Y131 N30 Y131 Hydrophobic Hydrophobic 1.02 View
C-H C-H R214 E73 R214 E73 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.3 View
C-H C-H R214 D74 R214 D74 Attractive Attractive 1.47 View
C-H C-H R214 Y52 R214 Y52 Hydrophobic Hydrophobic 1.0 View
C-H C-H R214 E73 R214 E73 Attractive Attractive 0.26 View
C-H C-H R214 Y52 R214 Y52 Hydrophobic Hydrophobic 0.93 View
C-H C-H L212 Y52 L212 Y52 Hydrophobic Hydrophobic 0.68 View
C-H C-H D215 H132 D215 H132 Attractive Attractive 0.98 View
C-H C-H R214 D50 R214 D50 Hydrogen Bonds Hydrogen Bonds 0.62 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 0.71 View
C-H C-H L212 Y52 L212 Y52 Hydrophobic Hydrophobic 1.73 View
C-H C-H R214 E73 R214 E73 Attractive Attractive 0.8 View
C-H C-H H66 D50 H66 D50 Attractive Attractive 0.41 View
C-H C-H T29 C130 T29 C130 Hydrogen Bonds Hydrogen Bonds 1.01 View
C-H C-H R214 D71 R214 D71 Attractive Attractive 0.52 View
C-H C-H W64 C130 W64 C130 Hydrophobic Hydrophobic 0.97 View
C-H C-H R214 D50 R214 D50 Attractive Attractive 0.4 View
C-H C-H R214 T49 R214 T49 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-H C-H N30 Y131 N30 Y131 Hydrophobic Hydrophobic 0.88 View
C-H C-H R214 E73 R214 E73 Attractive Attractive 0.34 View
C-H C-H D215 H132 D215 H132 Attractive Attractive 0.94 View
C-H C-H Y28 C130 Y28 C130 Hydrogen Bonds Hydrogen Bonds 0.66 View
C-H C-H R214 Y52 R214 Y52 Hydrophobic Hydrophobic 0.78 View
C-H C-H K97 E73 K97 E73 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.16 View
C-H C-H K97 E73 K97 E73 Attractive Attractive 0.68 View
C-H C-H D215 H132 D215 H132 Attractive Attractive Hydrogen Bonds 0.94 View
C-H C-H N30 Y131 N30 Y131 Hydrogen Bonds Hydrogen Bonds 1.11 View
C-H C-H T29 S129 T29 S129 Hydrogen Bonds Hydrogen Bonds 0.88 View
C-H C-H K97 D74 K97 E73 Attractive Hydrogen Bonds Hydrogen Bonds 1.25 View
C-H C-H R214 D74 R214 D74 Attractive Attractive 1.68 View
C-H C-H K97 D74 K97 D74 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.83 View
C-H C-H R214 E73 R214 E73 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.32 View
C-H C-H Y28 C130 Y28 C130 Hydrogen Bonds Hydrogen Bonds 0.85 View
C-H C-H R214 D50 R214 D50 Attractive Attractive 0.42 View
C-H C-H H66 D50 H66 D50 Attractive Attractive 0.62 View
C-H C-H R214 E73 R214 E73 Attractive Attractive 0.74 View
C-H C-H R214 D71 R214 D71 Attractive Attractive 0.56 View
C-H C-H F32 Y131 F32 Y131 Hydrophobic Hydrophobic 0.99 View
C-H C-H H66 D50 H66 D50 Attractive Attractive 0.51 View
C-H C-H R214 D74 R214 D74 Attractive Attractive 1.41 View
C-H C-H R214 D71 R214 D71 Attractive Attractive 0.6 View
C-H C-H L212 Y52 L212 Y52 Hydrophobic Hydrophobic 1.45 View
C-H C-H D215 H132 D215 H132 Hydrogen Bonds Hydrogen Bonds 0.96 View
C-H C-H R214 D71 R214 D71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.57 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 0.76 View
C-H C-H N61 S129 N61 S129 Hydrogen Bonds Hydrogen Bonds 1.04 View
C-H C-H R214 D71 R214 D71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.62 View
C-H C-H A27 P121 A27 P121 Hydrophobic Hydrophobic 0.72 View
C-H C-H Y28 G128 Y28 G128 Hydrogen Bonds Hydrogen Bonds 0.63 View
C-H C-H F32 Y131 F32 Y131 Hydrophobic Hydrophobic 0.86 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 1.43 View
C-H C-H R214 Y52 R214 Y52 Hydrophobic Hydrophobic 0.71 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 0.57 View
C-H C-H R214 D50 R214 D50 Attractive Attractive 0.36 View
C-H C-H A27 S122 A27 S122 Hydrogen Bonds Hydrogen Bonds 0.89 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 0.61 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 1.92 View
C-H C-H W64 P121 W64 P121 Hydrophobic Hydrophobic 0.72 View
C-H C-H Y28 P121 Y28 P121 Hydrogen Bonds Hydrogen Bonds 0.61 View
C-H C-H R214 T49 R214 T49 Hydrogen Bonds Hydrogen Bonds 0.4 View
C-H C-H R214 D71 R214 D71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.64 View
C-H C-H V213 Y52 L212 Y52 Hydrogen Bonds Hydrophobic 1.37 View
C-H C-H R214 D71 R214 D71 Attractive Attractive 0.49 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LAB | 7LAB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LAB C-H H69 D50 Attractive 5.65 View
7LAB C-H H69 E73 Attractive 5.87 View
7LAB C-H H69 E73 Attractive 4.88 View
7LAB C-H F186 D74 Hydrophobic 3.72 View
7LAB C-H F186 D74 Hydrophobic 3.67 View
7LAB C-H F186 E76 Hydrophobic 3.94 View
7LAB C-H F186 E76 Hydrophobic 4.04 View
7LAB C-H F186 E76 Hydrophobic 3.81 View
7LAB C-H F186 E76 Hydrophobic 4.01 View
7LAB C-H F186 E76 Hydrophobic 3.77 View
7LAB C-H F186 E76 Hydrophobic 3.87 View
7LAB C-H L212 L69 Hydrophobic 4.39 View
7LAB C-H L212 L69 Hydrophobic 4.16 View
7LAB C-H L212 L69 Hydrophobic 4.27 View
7LAB C-H L212 I78 Hydrophobic 4.35 View
7LAB_uk_mut C-H Y28 S129 Hydrogen Bonds 3.82 View
7LAB_uk_mut C-H N30 S129 Hydrogen Bonds 3.79 View
7LAB_uk_mut C-H F32 Y131 Hydrophobic 4.20 View
7LAB_uk_mut C-H W64 P121 Hydrophobic 4.01 View
7LAB_uk_mut C-H W64 P121 Hydrophobic 3.95 View
7LAB_uk_mut C-H H66 D50 Attractive 5.24 View
7LAB_uk_mut C-H K97 D74 Attractive, Hydrogen Bonds 3.91 View
7LAB_uk_mut C-H L212 Y52 Hydrophobic 4.01 View
7LAB_uk_mut C-H R214 T49 Hydrogen Bonds 3.75 View
7LAB_uk_mut C-H R214 D50 Hydrogen Bonds 3.44 View
7LAB_uk_mut C-H R214 D50 Attractive 5.92 View
7LAB_uk_mut C-H R214 D74 Attractive 5.37 View
7LAB_uk_mut C-H R214 D74 Attractive 4.92 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph