VTR

6 main matches found (17 matches in total )

Execution time: 22.0 seconds

Match RMSD = 0.62

VTR = 0.03

Average AVD = 0.59 Å

Parameters

Chains(7L56.pdb ): B versus J

Chains(7L56_uk_mut.pdb ) B versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L56 3623 12 0 6 0 0 0 18
B7L56_uk_mut 3620 16 0 7 0 0 0 23

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-J B-J Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.99 View
B-J B-J Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.47 View
B-J B-J E484 W50 E484 W50 Hydrophobic Hydrophobic 0.45 View
B-J B-J Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.6 View
B-J B-J Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.85 View
B-J B-J F490 N53 F490 N53 Hydrophobic Hydrophobic 0.66 View
B-J B-J Q498 T28 Q498 T28 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-J B-J Y449 F29 Y449 F29 Hydrogen Bonds Hydrogen Bonds 0.64 View
B-J B-J F490 N53 F490 N53 Hydrophobic Hydrophobic 0.72 View
B-J B-J Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.43 View
B-J B-J S494 T30 S494 T30 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-J B-J E484 Y33 E484 Y33 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-J B-J E484 N52 E484 N52 Hydrogen Bonds Hydrogen Bonds 0.32 View
B-J B-J Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.59 View
B-J B-J Y449 Y27 Y449 Y27 Hydrogen Bonds Hydrogen Bonds 0.68 View
B-J B-J Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.77 View
B-J B-J Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.64 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L56 | 7L56_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L56 B-J L455 V98 Hydrophobic 4.27 View
7L56_uk_mut B-J K444 S74 Hydrogen Bonds 3.50 View
7L56_uk_mut B-J Y449 T73 Hydrophobic 4.35 View
7L56_uk_mut B-J E484 Y33 Hydrophobic 4.45 View
7L56_uk_mut B-J E484 W50 Hydrophobic 4.05 View
7L56_uk_mut B-J E484 W50 Hydrophobic 4.35 View
7L56_uk_mut B-J E484 W50 Hydrophobic 4.24 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph