VTR

3 main matches found (25 matches in total )

Execution time: 20.0 seconds

Match RMSD = 0.97

VTR = 0.03

Average AVD = 0.91 Å

Parameters

Chains(7L56.pdb ): A versus L

Chains(7L56_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L56 3623 22 0 2 0 0 1 25
B7L56_uk_mut 3620 26 0 2 0 0 2 30

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.7 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.57 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.6 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.73 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.55 View
A-L A-L F486 Y91 F486 Y91 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 1.0 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.91 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.3 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.49 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.53 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.66 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.33 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 1.03 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.31 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.71 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.52 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.26 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.44 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.84 View
A-L A-L E484 S95 E484 S95 Hydrogen Bonds Hydrogen Bonds 1.36 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.84 View
A-L A-L F486 Y30 F486 Y30 Aromatic Stacking Aromatic Stacking 0.56 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.51 View
A-L A-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 1.44 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L56 | 7L56_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L56_uk_mut A-L F486 Y32 Aromatic Stacking 5.68 View
7L56_uk_mut A-L F486 Y32 Hydrophobic 4.41 View
7L56_uk_mut A-L F486 Y32 Hydrophobic 3.33 View
7L56_uk_mut A-L F486 Y32 Hydrophobic 3.28 View
7L56_uk_mut A-L F486 Y91 Hydrophobic 4.25 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph