VTR

11 main matches found (19 matches in total )

Execution time: 28.0 seconds

Match RMSD = 0.57

VTR = 0.06

Average AVD = 0.49 Å

Parameters

Chains(7L2E.pdb ): C versus I

Chains(7L2E_uk_mut.pdb ) C versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L2E 4011 19 0 16 0 0 0 35
B7L2E_uk_mut 4002 15 0 15 0 0 0 30

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-I C-I Y248 H58 Y248 H58 Hydrogen Bonds Hydrogen Bonds 0.49 View
C-I C-I N17 N56 N17 N56 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-I C-I T250 G33 T250 G33 Hydrogen Bonds Hydrogen Bonds 0.35 View
C-I C-I L249 V50 L249 V50 Hydrophobic Hydrophobic 0.23 View
C-I C-I T250 D95 T250 S96 Hydrogen Bonds Hydrogen Bonds 0.71 View
C-I C-I S247 Y98 S247 Y98 Hydrogen Bonds Hydrogen Bonds 1.42 View
C-I C-I L249 V50 L249 V50 Hydrophobic Hydrophobic 0.35 View
C-I C-I N17 S55 N17 S55 Hydrogen Bonds Hydrogen Bonds 0.66 View
C-I C-I T250 D95 T250 D95 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-I C-I T250 Y32 T250 Y32 Hydrophobic Hydrophobic 0.56 View
C-I C-I Y248 S52 Y248 S52 Hydrogen Bonds Hydrogen Bonds 0.43 View
C-I C-I T250 Y32 T250 Y32 Hydrophobic Hydrophobic 0.75 View
C-I C-I N17 N56 N17 N56 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-I C-I Y248 N56 Y248 N56 Hydrophobic Hydrophobic 0.17 View
C-I C-I N17 S55 N17 S55 Hydrogen Bonds Hydrogen Bonds 0.49 View
C-I C-I L249 G33 L249 G33 Hydrogen Bonds Hydrogen Bonds 0.33 View
C-I C-I L249 V50 L249 V50 Hydrophobic Hydrophobic 0.22 View
C-I C-I T250 Y32 T250 Y32 Hydrophobic Hydrophobic 0.68 View
C-I C-I Y248 N56 Y248 N56 Hydrophobic Hydrophobic 0.15 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L2E | 7L2E_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L2E C-I Y144 Y100 Hydrophobic 4.42 View
7L2E C-I Y144 Y100 Hydrophobic 3.83 View
7L2E C-I Y144 Y100 Hydrophobic 4.08 View
7L2E C-I E156 Y100 Hydrophobic 3.99 View
7L2E C-I E156 Y100 Hydrogen Bonds 2.61 View
7L2E C-I R158 Y100 Hydrogen Bonds 2.67 View
7L2E C-I R158 Y100 Hydrogen Bonds 3.07 View
7L2E C-I L244 Y100 Hydrophobic 4.28 View
7L2E C-I H245 Y100 Hydrogen Bonds 3.30 View
7L2E C-I R246 Y100 Hydrogen Bonds 3.84 View
7L2E C-I Y248 Y100 Hydrophobic 4.16 View
7L2E C-I Y248 Y100 Hydrophobic 3.95 View
7L2E C-I Y248 Y100 Hydrophobic 4.02 View
7L2E C-I Y248 Y100 Hydrophobic 3.47 View
7L2E C-I T250 Y98 Hydrophobic 3.74 View
7L2E C-I T250 Y98 Hydrophobic 3.63 View
7L2E_uk_mut C-I V16 N56 Hydrophobic 4.26 View
7L2E_uk_mut C-I S247 Y100 Hydrogen Bonds 3.65 View
7L2E_uk_mut C-I L249 Y100 Hydrophobic 4.41 View
7L2E_uk_mut C-I L249 Y100 Hydrophobic 3.97 View
7L2E_uk_mut C-I L249 Y100 Hydrophobic 3.84 View
7L2E_uk_mut C-I L249 Y100 Hydrophobic 3.93 View
7L2E_uk_mut C-I L249 Y100 Hydrophobic 3.20 View
7L2E_uk_mut C-I T250 Y32 Hydrophobic 4.24 View
7L2E_uk_mut C-I T250 D95 Hydrogen Bonds 2.93 View
7L2E_uk_mut C-I T250 G97 Hydrogen Bonds 3.88 View
7L2E_uk_mut C-I D253 Y98 Hydrogen Bonds 3.30 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph