VTR

9 main matches found (16 matches in total )

Execution time: 25.0 seconds

Match RMSD = 0.71

VTR = 0.06

Average AVD = 0.68 Å

Parameters

Chains(7L2E.pdb ): A versus L

Chains(7L2E_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L2E 4011 7 4 6 0 0 0 17
B7L2E_uk_mut 4002 15 4 7 0 0 0 26

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L L249 W96 L249 W96 Hydrophobic Hydrophobic 0.51 View
A-L A-L L249 W96 L249 W96 Hydrophobic Hydrophobic 0.45 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.56 View
A-L A-L K147 Q31 K147 Q31 Hydrogen Bonds Hydrogen Bonds 0.74 View
A-L A-L E154 K30 E154 K30 Attractive Attractive 0.89 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.43 View
A-L A-L K147 D51 K147 D51 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.83 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.51 View
A-L A-L K147 Y32 K147 Y32 Hydrogen Bonds Hydrogen Bonds 1.0 View
A-L A-L K147 L28 K147 L28 Hydrogen Bonds Hydrogen Bonds 0.73 View
A-L A-L K147 S66 K147 S66 Hydrogen Bonds Hydrogen Bonds 0.76 View
A-L A-L E154 K30 E154 K30 Attractive Attractive 0.72 View
A-L A-L K147 K30 K147 K30 Hydrogen Bonds Hydrogen Bonds 0.94 View
A-L A-L K147 D51 K147 D51 Attractive Attractive 0.81 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.56 View
A-L A-L K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.5 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L2E | 7L2E_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L2E_uk_mut A-L K147 A29 Hydrogen Bonds 3.55 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 4.08 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 3.93 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 3.83 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 3.50 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 3.39 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 4.21 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 3.82 View
7L2E_uk_mut A-L K147 Y32 Hydrophobic 3.98 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph